PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05601A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 542aa    MW: 57945.9 Da    PI: 8.9159
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05601AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.51e-17268317255
                                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  Oropetium_20150105_05601A 268 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 317
                                889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-23263337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-18264334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.78266316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-15268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.87E-16268321No hitNo description
SMARTSM003532.6E-13272322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MGIKGNKAAT HEHDFLSLYT ATAAKDSHPL QLHGADSKTP PPSQGFVLKT HDFLQPLDKP  60
GEATSSGADA TPVCVVTKPQ ALPLPGGVGT FSIRPAAAAV VKAEPPPFVL WGQPAKKKKN  120
KAKAKAKAGC FCLCVSSCCV LHSAAGQQHH HQWALPFAGA GQVGPLQHQL QPERKAWGGG  180
TMDSGSRSSG GAGFDDDDGL AARREVSSSL KAMYARFGYI LAARALFDRV PSPHVNVILW  240
NAMISVRVER KGGSCSDGGT DQRPNTPRSK HSATEQRRRS KINDRFQILR ELLPHSDQKR  300
DKATFLLEVI EYIRFLQEKV QKFEATFPEW NQENAKVLPW SKGQIPGEAL PDPSQFMRNG  360
SSPGLNFTGK LDDNHNTVTS AAASGAQDEA ETDHMASVSY KSGETPTNIT NNATSQCQPQ  420
WTGPSPVDDC AVNSEMLNNQ QLTIDEGTIS VSSQYSQELL NSLTQALQSS GIDLSQASIS  480
VQINLGKRAV KRPAAGVSSI SKEPTETQPS SNYKTGHQQT MLGGGGEAPS NATKRHKSGN  540
S*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05601A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650819.10.0putative HLH DNA-binding domain superfamily protein isoform X2
TrEMBLB6SVP60.0B6SVP6_MAIZE; Transcription factor BIM2
STRINGSi029604m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-63BES1-interacting Myc-like protein 2