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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_05464A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
NAC |
| Protein Properties |
Length: 367aa MW: 39897.2 Da PI: 9.3062 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_05464A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 179.8 | 7.1e-56 | 24 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84
lppGfrFhPtdeel+++yL++k+++ ++++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk
Oropetium_20150105_05464A 24 LPPGFRFHPTDEELITYYLRQKLADGSFTA-RAIAEVDLNKCEPWDLPEKAKLGEKEWYFFSLRDRKYPTGVRTNRATNAGYWK 106
79*************************999.89***************99999******************************* PP
NAM 85 atgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
+tgkdke+++ ++elvg+kktLvfykgrap+gekt+Wvmheyr+
Oropetium_20150105_05464A 107 TTGKDKEIFTGqlpaTQELVGMKKTLVFYKGRAPRGEKTNWVMHEYRV 154
*********9888888888***************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 367 aa
Download sequence Send
to blast |
MSMEGSAGTA AAGGGGSSKK EESLPPGFRF HPTDEELITY YLRQKLADGS FTARAIAEVD 60
LNKCEPWDLP EKAKLGEKEW YFFSLRDRKY PTGVRTNRAT NAGYWKTTGK DKEIFTGQLP 120
ATQELVGMKK TLVFYKGRAP RGEKTNWVMH EYRVHSKSAS KSNKDEWVVC RVFAKSAGVK 180
KYASNNAHSR SHHHHHHHPY ATLDMVPPLL PTLLQHDPFA RHHHHPYMTP ADLAELARYA 240
RGTPGLHPHI QPHPGGFINP AATPPFALPG LNLNLGASPA TMPSPQPALH AAMTSSMAAP 300
SGGAVLAGHQ VMVSEQQQMA PGLCGGVMAP GGAGPDAGFA GTDGVRYQNL DLEQLVERYW 360
PAGYQV*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-56 | 23 | 181 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-56 | 23 | 181 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-56 | 23 | 181 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-56 | 23 | 181 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 5e-56 | 23 | 181 | 19 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 5e-56 | 23 | 181 | 19 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 5e-56 | 23 | 181 | 19 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 5e-56 | 23 | 181 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 5e-56 | 23 | 181 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 5e-56 | 23 | 181 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 5e-56 | 23 | 181 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 5e-56 | 23 | 181 | 19 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 4e-56 | 23 | 181 | 16 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 4e-56 | 23 | 181 | 16 | 171 | NAC domain-containing protein 19 |
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