PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05110A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family SBP
Protein Properties Length: 854aa    MW: 93800.2 Da    PI: 6.3738
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05110AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP48.32.7e-15183242175
                                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS
                        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 
                                +Cqv+gCead+ e+k yhrrh+vC  +++a++v+++g+++r+CqqC++               r+L++hn+rrr+
  Oropetium_20150105_05110A 183 RCQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLEGVQKRYCQQCGK---------------RKLERHNKRRRR 242
                                6*********************************************97...............455555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-17178233IPR004333Transcription factor, SBP-box
PROSITE profilePS5114118.674181243IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.18E-20182246IPR004333Transcription factor, SBP-box
PfamPF031101.3E-13184241IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MDAPNSGGGG VDSGDPGWDW GNLLDFDVQD DDSLVLPWDD AVGIGAADPN EAGASLLATP  60
PPQPXXXXXX XXXXXEPEPG PVLPPPPLHV QGIGRRVRKR DPRLVCPNYL AGRVPCACPE  120
VDEMAAAAEV EDVATELLAG ARKKVKAAGR RGKAVAVGGA GGGVAAAGGG AGGAGRPAPA  180
EMRCQVPGCE ADIRELKGYH RRHRVCLRCA HAAAVMLEGV QKRYCQQCGK RKLERHNKRR  240
RRKPDSKGPV EKEMDEHLDL SADVSGDGEL PEENIEGTSR EMLETVLSNK LLDKETPVGS  300
EDILSSPTCT QPSLQNEQSK SIVMFAASVE ACIGAKQESM KLTSSPVHDT KSAYSSSCPT  360
GRISFKLYDW NPAEFPRRLR HQIFEWLANM PVELEGYIRP GCTILTVFIA MPQHMWDKLS  420
DDADNLLRKL VNSPSSLLVG KGAFFIHFDD MIFQVLKDGA TLTSTRLEVQ APRIHYVHPT  480
WFEAGKPVEL LLCGSFLDQP KFRSLLSFDG DYLKHDFFRL ASFDGFDCVD KGDLTHNSQH  540
ETFRISISQS RSDTYGPAFL EVENVSGLSN FVPILFGSKQ LCSELEKIQD ILCGSSGKNN  600
DIFGEFPGIS SKPCEQQKIR NTAMAGFLID IGWLIKKPTP EELQHVLSLT NVQRWICMLK  660
FLIQNDFFNI LEIIMKSMEN IIGSEILSNM ERGRMEDHIT TFIGYVNHAR SIVYNRGKHG  720
NETQLETRWT IDNFPKQPSL ETSVQLDKEI TCLGGDNDLH STSAACAEEV TMPLVPKDTS  780
HRQCCHPDIS ARWLKPSLVT TLPGGATRMR LLTSVVVAAV LCFTACVALF HPHRVGVLAA  840
PVKRYLYRGD SAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A6e-25183250587squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229241KRKLERHNKRRRR
2236243NKRRRRKP
3237242KRRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05110A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656292.20.0squamosa promoter-binding-like protein 9
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLA0A1D6FQB10.0A0A1D6FQB1_MAIZE; Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
STRINGGRMZM2G109354_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.11e-125squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]