PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04950A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 409aa    MW: 44911.3 Da    PI: 8.9561
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04950AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-05228247120
                                EEETTTTEEESSHHHHHHHH CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                + C+ C+k+F+r  n++ H+
  Oropetium_20150105_04950A 228 FICNVCSKTFNRYNNMQMHM 247
                                89*****************9 PP
2zf-C2H212.10.00058314336123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                + C  Cgk+F  k + ++H +++
  Oropetium_20150105_04950A 314 FGCRRCGKPFAVKGDWRTHEKNC 336
                                56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.66E-5226253No hitNo description
Gene3DG3DSA:3.30.160.601.2E-4228247IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.346228255IPR007087Zinc finger, C2H2
PROSITE patternPS000280230250IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MVVCAMDSAA GFGGVQFFEW LKPSSSRSPP SSPSSFSAAS SGLSTLSSTV VVGDDGARLD  60
TSLCLPLLGR LDEDRAATTS PEHRGGRNNN SHNVKEEPMI SMMSSNSIAX XXXXXXXXXE  120
EEEADVELNI GLPTIGGYTY SSSEDQAAAM XXXXXXXXXX XXXXXXXXXX XXXXGHEQQH  180
VHIEMMEGSG GFVRVGGEED MIKGVISSRG RRYWIPTPAQ ILIGPVQFIC NVCSKTFNRY  240
NNMQMHMWGH GREYRKGPES LKGTQAATLA LLKLPCYCCA PGCRNGVSHP RARPLKDFRT  300
LQTHYKRKHG AKHFGCRRCG KPFAVKGDWR THEKNCGKRW FCACGSDFKH KRSLNDHVRS  360
FGGGHLPVTA ADQQQAPPPG AAAVPKQQRI IRFDQAAPAA AWNRQTHA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04950A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3592221e-147AK359222.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1092D14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439878.11e-144protein TRANSPARENT TESTA 1
TrEMBLC5YYT01e-143C5YYT0_SORBI; Uncharacterized protein
STRINGSb09g021850.11e-144(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.13e-93WIP domain protein 5