 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_04889A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
MYB |
| Protein Properties |
Length: 596aa MW: 66010 Da PI: 7.682 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_04889A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 54.3 | 3e-17 | 65 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT+eEde l +av + g++Wk+Ia+ ++ +Rt+ qc +rwqk+l
Oropetium_20150105_04889A 65 KGGWTPEEDENLRKAVSAFKGRHWKKIAEFVP-HRTEVQCLHRWQKVL 111
688*****************************.************986 PP
|
| 2 | Myb_DNA-binding | 58.7 | 1.4e-18 | 117 | 163 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++++++vk++G++ W+ Ia+ + gR +kqc++rw+++l
Oropetium_20150105_04889A 117 KGSWTQEEDDIIINLVKKHGPKKWSVIASSLD-GRIGKQCRERWHNHL 163
799*****************************.*************97 PP
|
| 3 | Myb_DNA-binding | 55.6 | 1.2e-17 | 169 | 212 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+ +WT eE+ l++a++ +G++ W+ Ia+ ++ gRt++++k++w++
Oropetium_20150105_04889A 169 KEAWTVEEEHVLANAHHVYGNK-WAEIAKLLP-GRTDNSIKNHWNS 212
579*******************.*********.***********96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 596 aa
Download sequence Send
to blast |
MTAVKVEERE GTAVDWRNLE VPLPPTSPLK TESCGGGAPM SPAVYSPADS VSAHRRTSGP 60
VRRAKGGWTP EEDENLRKAV SAFKGRHWKK IAEFVPHRTE VQCLHRWQKV LNPELVKGSW 120
TQEEDDIIIN LVKKHGPKKW SVIASSLDGR IGKQCRERWH NHLDPQIRKE AWTVEEEHVL 180
ANAHHVYGNK WAEIAKLLPG RTDNSIKNHW NSSLKKRLDH YKTSSTLPVS MPIVHDSLKH 240
VKKPIALNHI DLNKDPDMHL EGPPEIVGHS ERTSHLHACN VKDIKSCLEF LSLSMPTAQQ 300
EIPCEAVVAQ DSSVALAMQG LKLDAVDDKS TEYKIVCEGV GVGSLNLEAA DVGRIIDRMT 360
YSVPIRPGCK TDSNLCELSL MNESSSSLGS LCYQIPKLED IIPAHSPVFS RHHVQDNRVD 420
GFQSPIGFST FSPVDGNTRD QLSVESILKS AAETFPGTPS ILRRRKREKP LDAQESKIKI 480
DILNGDSFHT PVGKCAAVSP HSFKTATFLS LGPPDGEELS AALGSVDVSP AYRLRSKRMA 540
VVKSIERQLD FSMDEMDNHS TTTDILLKTT SWNTNSSTGV SSMPEKSMRK HIDLI*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 462 | 469 | RRRKREKP |
| 2 | 463 | 468 | RRKREK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
