 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_04730A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
TCP |
| Protein Properties |
Length: 232aa MW: 23936.6 Da PI: 10.2624 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_04730A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 127.6 | 1.3e-39 | 28 | 117 | 2 | 102 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssas 83
a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s +ss+s
Oropetium_20150105_04730A 28 AVRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSSSS 111
789*************************************************************99999777443333333333 PP
TCP 84 nsssgkaaksaakskksqk 102
+ +++ +
Oropetium_20150105_04730A 112 SAHAQ-------------H 117
11111.............1 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 232 aa
Download sequence Send
to blast |
MTTRPDGGDK QQQQLVPSSA NATSNGGAVR KAPSKDRHSK VDGRGRRIRM PIICAARVFQ 60
LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFST SSPSSLRSSS SSAHAQHQHS 120
SVSVLPHAAP FILGKRVRGA DDDDNEVTAA AVGPAQGFWA LPARADFGQL WSFAAAPDMM 180
VAAAVPGEAS AARVGNYLPV AQGNLNLLAS FSGGPAGNGT TAARAEEESA R*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK240798 | 1e-105 | AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence. |
| GenBank | AP004776 | 1e-105 | AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04. |
| GenBank | AP014958 | 1e-105 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012610 | 1e-105 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
