PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04693A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 633aa    MW: 68455 Da    PI: 4.223
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04693AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1133.2e-354315228128
                        NAM  28 leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknratksgyWkatgkdkevlskkgelv 100
                                l++ ++i+evd+y++ePw+Lp  +++++++ +wyfF++ d+k +          g+r+nrat +gyWk+tgkd+ev++ +g++v
  Oropetium_20150105_04693A  43 LRV-DAIAEVDLYRLEPWELPslSRIRSRDAQWYFFARLDRKITgagaggrggPGNRTNRATPQGYWKTTGKDREVHH-RGKAV 124
                                455.78***************5448999999***********99777777665567**********************.999** PP

                        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                                g+kktLvf++grapkg +t+Wvmheyrl
  Oropetium_20150105_04693A 125 GMKKTLVFHSGRAPKGARTNWVMHEYRL 152
                                **************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.6881170IPR003441NAC domain
SuperFamilySSF1019412.35E-3941170IPR003441NAC domain
PfamPF023656.8E-1562152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MSGSSPPDSS SAEVPLAPXX XXXXXXXXXX XXXXXXXXXX RRLRVDAIAE VDLYRLEPWE  60
LPSLSRIRSR DAQWYFFARL DRKITGAGAG GRGGPGNRTN RATPQGYWKT TGKDREVHHR  120
GKAVGMKKTL VFHSGRAPKG ARTNWVMHEY RLLDADGPQD LHVVCRIFQK FGSGPQNGAQ  180
YGAPYMEEEW EEDDDSVEKG SATAAPPKVS AILDTADEES NEEDENCKTN EPAQAHEIPN  240
PPEMAALQAQ GSNETSDGSY DDGAISMEEI LSSTISAQNI VGPEGQNATD DNICVADFSE  300
APTQDNGYVV QDGTMNWTDP ANGECSNWPL RAYSNQNPVN GTLSADEFFD TGNGVNENAC  360
SGQQQICQSD YQNMNLQADG FVAPRHADDS MVFYDAPPSW GDGNNDLYLS ELLNGPFEDP  420
SLLEVNDLMD YFVDAPENDF LLGSEASDYQ LTEMLSFAQK GDDKDNSAFD GKISDAKAHY  480
GASSSGSHED LYPDTAVPVD GTADKAFGKH LVSMLGSIPA APAFATECPP ATGKSVLAGV  540
NPSSIRVTAG IIQLGGVNFT GSERGLLQKN GDFSLLLSFT METDVAAKST GFEPATRVGA  600
VPMVMRSGFY LFFVSAMILM LSYKIGSCIY SR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-294115240140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04693A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0641330.0BT064133.1 Zea mays full-length cDNA clone ZM_BFc0140G07 mRNA, complete cds.
GenBankBT0675810.0BT067581.1 Zea mays full-length cDNA clone ZM_BFc0097N06 mRNA, complete cds.
GenBankEU9759360.0EU975936.1 Zea mays clone 505923 NAC domain-containing protein 78 mRNA, complete cds.
GenBankKJ7269850.0KJ726985.1 Zea mays clone pUT3686 NAC transcription factor (NAC26) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453065.10.0NAC domain-containing protein 53 isoform X1
TrEMBLA0A3L6RSV20.0A0A3L6RSV2_PANMI; NAC domain-containing protein 53
STRINGSb04g037720.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129312833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-49NAC domain containing protein 2