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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_04684A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | C2H2 | ||||||||
Protein Properties | Length: 206aa MW: 22692.5 Da PI: 5.3792 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 53 | 75 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C + F++ L H+++H Oropetium_20150105_04684A 53 YSCAFCRRGFPTAQALGGHMNVH 75 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.24E-6 | 50 | 79 | No hit | No description |
PROSITE profile | PS50157 | 10.429 | 53 | 80 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 55 | 75 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MEESAARSRE RKTKQQDEGA ACTPAARAHD EADDGKDYEQ EEVEDEAGTR EPYSCAFCRR 60 GFPTAQALGG HMNVHRRHRS AAAAQAGRRS SGCDYDYEQQ QYSLIVSTTD MTTSTGGGES 120 LSLFHHHAAA DQHRRVVAAP EERKKELLRL FRGGDHHCGK GADEDLLVQE EEQDRRRQHS 180 LKDQGKEGEE ELDLELRLGG GAAGS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_04684A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14547 | 22 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 4e-09 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_04684A |