PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04275A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 428aa    MW: 46687.4 Da    PI: 8.0911
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04275AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.1e-10133175132
                                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC............. CS
                        HLH   1 rrrahnerErrRRdriNsafeeLrellPkas...........k 32 
                                +rr+h ++Er+RR+++N+ ++ Lr+++P+++           +
  Oropetium_20150105_04275A 133 QRRNHIAVERNRRRQMNEYLAVLRSVMPPSYaqrvpragartR 175
                                79***************************85566666555552 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.94E-10132160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.594132249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-10132169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.24E-7132166No hitNo description
PfamPF000102.9E-7133175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.94E-10227268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-10232253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MALEAVVFPQ EHLVCTAKAM XXXXXXXXXX XXXXIDDIFF EEFEDKGGVV LQEEEAEALA  60
ALHGSVAATC WDAAVICPCS VAPRAVEEPW DHRHSVSPPP PVPAPERCNK AAASRRRRMR  120
PXXXXXXXXX XNQRRNHIAV ERNRRRQMNE YLAVLRSVMP PSYAQRVPRA GARTRTPKKK  180
NVFCTDADAD RASKAAPSCS PSSWSRPEWH VLTVAVQCNV CCNDGVXXXX XXXXXASVVA  240
GAINFVKELE QTQQSLEALK RSASSRRADQ QQPPPFAGFF TFPQYSTGAF SGGVAAVAAX  300
XXXXXXXXXA GGDQCAAAAA RRGVADVEVA VAESHANVKV LTPRRPRQLL RMLVALQCLG  360
FTVLHLNVTT TADNLAFYSF SLKMEDQCRL SSVDEIAAAV HEIVAKIADE EGAAATVTCL  420
IRGRSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134144RNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04275A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0359322e-81BT035932.2 Zea mays full-length cDNA clone ZM_BFb0088K06 mRNA, complete cds.
GenBankBT0605122e-81BT060512.1 Zea mays full-length cDNA clone ZM_BFb0009D23 mRNA, complete cds.
GenBankEU9746572e-81EU974657.1 Zea mays clone 455383 mRNA sequence.
GenBankKJ7267892e-81KJ726789.1 Zea mays clone pUT2274 bHLH transcription factor (bHLH36) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953984.19e-64transcription factor bHLH94
STRINGOPUNC02G30580.11e-63(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.14e-27bHLH family protein