 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_03905A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
Trihelix |
| Protein Properties |
Length: 352aa MW: 38137.7 Da PI: 10.729 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_03905A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 47 | 6.6e-15 | 37 | 123 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsesss 77
+W++ e+ aL+ a ++ +l+rg+l++++W+ev++++ ++r r+ +qCk++ + l+k+yk++++++ s
Oropetium_20150105_03905A 37 CWSDGETAALVSAWGSRYVELNRGNLRQKQWQEVADAVnsrrgasARRRPPRTDVQCKNRVDTLKKKYKAERARNAP------S 114
7*****************************************999999999************************97......4 PP
trihelix 78 tcpyfdqle 86
+++f++l+
Oropetium_20150105_03905A 115 GWSFFHELD 123
7******98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 352 aa
Download sequence Send
to blast |
MEVREMAXXX XXXXXXXGGG GGKLPPPNPN LPYREDCWSD GETAALVSAW GSRYVELNRG 60
NLRQKQWQEV ADAVNSRRGA SARRRPPRTD VQCKNRVDTL KKKYKAERAR NAPSGWSFFH 120
ELDRLVGPTL NASASKRPSP STVPQFAMPV HPPPIRKPPS PSLSPSPPPA VMGKPPPPMA 180
LPLPNNRRGY PLPAAALIQQ EAAAAAAAMS DSEDSDDAGA KNNYNTQQSP SRSVSSLSGN 240
SKKRSRPGTG SGDRGFRELA RAIEAFAEMY ERVENAKQKH ALEMERQRID FLKQLEVKRM 300
ENFVDAHVKL VRAKRVKKMA GAGGASDGAA AGVELVATVA ALPFVSSSSF H*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT039806 | 1e-135 | BT039806.1 Zea mays full-length cDNA clone ZM_BFc0045P15 mRNA, complete cds. |
| GenBank | BT043387 | 1e-135 | BT043387.2 Zea mays full-length cDNA clone ZM_BFc0175K05 mRNA, complete cds. |
| GenBank | EU967122 | 1e-135 | EU967122.1 Zea mays clone 299578 6b-interacting protein 1 mRNA, complete cds. |
| GenBank | HQ858672 | 1e-135 | HQ858672.1 Zea mays clone UT1108 Trihelix transcription factor mRNA, partial cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G14180.1 | 1e-29 | sequence-specific DNA binding transcription factors |
