PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03894A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HB-other
Protein Properties Length: 616aa    MW: 69164.9 Da    PI: 7.1908
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03894AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.4e-1948102357
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                                kR   t++qle+Le+ + +++yp++ +r+eL+ +lgLt+rq ++WF+ rR k++k
  Oropetium_20150105_03894A  48 KRVMKTPYQLEVLERTYSEDPYPNEGRRAELSVQLGLTDRQLQMWFCHRRLKDRK 102
                                79999************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.54E-1830104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-1833102IPR009057Homeodomain-like
PROSITE profilePS5007116.58443103IPR001356Homeobox domain
SMARTSM003891.6E-1845107IPR001356Homeobox domain
PfamPF000465.8E-1748102IPR001356Homeobox domain
CDDcd000864.55E-1448104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MESGDGGDEG SGAPAVGAGS PGPASAPAAV GGGSGAGASG SGGKPPVKRV MKTPYQLEVL  60
ERTYSEDPYP NEGRRAELSV QLGLTDRQLQ MWFCHRRLKD RKPQQTKRQL RDEEVAMPVI  120
APPPVLPQPP LPPSEIMVGT VGTYGDHLLP LPGPRRGPGR SSAVPRISVP EIGRRYYEAP  180
QIMLPPMAPV RLTQAEQRVI DSVEALIGEP LREDGPVLGI EFDPLPPGAF GAPIVPEQQT  240
QPFRSYESKM FSGHDHKLMK ASAFLPSVDP FVSNTITGKR KSFPGSSSHL GTQAVHEYQF  300
LPEQPSDIYE RANKPRFYDS PAEASNSRIS SLHTGSRFLH GADQAPSYTL HGQTGSGHLA  360
QHGRSPGLPL ASTDHEMELS DINVNSALSH GQLGVPQIAG FENSLAPSEM GYHDEDAYRG  420
DRKRKHIEEA KIAKEVEAHE KRIRKELEKQ DLLNRKREEQ MRREMERHDR ERRKEEDRLL  480
RERQRENERL QREQRRENKR MEKYLLKQSI RAEKLRQKEE LRKEKEAARQ KAANERATAR  540
RIAREYMELM EDERLELMEL AARSKGLPSM LSLDSDTLQQ LDSFRDVLRL PSFTLDEFIQ  600
ALHDYVSFDI FYDIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03894A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808936.10.0homeobox-DDT domain protein RLT2
TrEMBLA0A0E0A2S40.0A0A0E0A2S4_9ORYZ; Uncharacterized protein
STRINGPavir.Ca00923.1.p0.0(Panicum virgatum)
STRINGPavir.J20612.1.p0.0(Panicum virgatum)
STRINGOGLUM05G27370.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22833352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.12e-38homeobox-1