 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_03804A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
C3H |
| Protein Properties |
Length: 357aa MW: 38907.5 Da PI: 7.0859 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_03804A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 43.4 | 5.4e-14 | 282 | 307 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+ktelC+ + +tG C+yGd C+FaHg
Oropetium_20150105_03804A 282 FKTELCNKWEETGACQYGDHCQFAHG 307
79***********************8 PP
|
| 2 | zf-CCCH | 21.8 | 3.3e-07 | 320 | 345 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykte Cr +++ C+yG rC+F H+
Oropetium_20150105_03804A 320 YKTEVCRMVLAGILCPYGHRCHFRHS 345
9**********99**********997 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 1.0E-17 | 276 | 314 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.14E-10 | 278 | 313 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.4E-8 | 281 | 308 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.009 | 281 | 309 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.5E-11 | 282 | 307 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.2E-11 | 315 | 345 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.29E-8 | 316 | 346 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.169 | 319 | 347 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.4E-5 | 319 | 346 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.2E-4 | 320 | 345 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 357 aa
Download sequence Send
to blast |
METLLPAAAQ LDGLHAAAFV PKPRVSSQPN LLANDGDLLC SGGGYSTHPL GREPERSASR 60
SPRARSSPHT GSVVDEEDDS PATAEHRARL ARSSPDTGSV VDEEDNSPAA AEHLARLALR 120
FQVEANRYQL CLSHLADTSD EAVALRREND QLRFDNGELV RRIATLGGQH SSAIALADEF 180
RRLTLAEEQA RAXXXXXXXX XXXXVMRPVP AAMPKSISVR STGYLKMNPS GKHRGPETNN 240
AGSQRVFVGL DGGGVKGQEK NGAEKEQGAG GVEFEVYNQG MFKTELCNKW EETGACQYGD 300
HCQFAHGIAE LRPVIRHPRY KTEVCRMVLA GILCPYGHRC HFRHSITPAD THLLHR*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC098571 | 2e-90 | AC098571.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1126_B10, complete sequence. |
| GenBank | AC098832 | 2e-90 | AC098832.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1268_B08, complete sequence. |
| GenBank | AK106354 | 2e-90 | AK106354.1 Oryza sativa Japonica Group cDNA clone:002-102-A03, full insert sequence. |
| GenBank | AP014961 | 2e-90 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012613 | 2e-90 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
