PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03703A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 340aa    MW: 35228.5 Da    PI: 4.4796
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03703AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.7e-06229269954
                                HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                 r RR+ri +++  L++l+P  +      +++ a++L +A  Y++ L
  Oropetium_20150105_03703A 229 ARLRRERISERLRALQRLVPGgC------RMDTASMLDEAASYLRFL 269
                                599******************77......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.81E-10213274No hitNo description
PROSITE profilePS5088814.043220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-12226280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-9226277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-11226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDFFGWSTQS YAAEPCLPSR PSDDDDNGLL SAVLCTSLHN GLYTDHSSLA AMSSSSQTIP  60
ILVQGHDGTS DLPDSGTPAG TLPNVMTNGA VEDDDLFDAF AYVVPNFAEG SAQAAASNLS  120
GYGSSSTTGG GNGNISSGES NTCGGGGQDV EVASPCSVSQ QTLIHTDNGE DEGDSHGAGS  180
SWVDVLIDQP RHVPGAADPQ PPPSPDVNTV KPRRRKNVRI SSDPQTVAAR LRRERISERL  240
RALQRLVPGG CRMDTASMLD EAASYLRFLK SQIKALESWG GYCNGGGGGS LLQNYCTGNR  300
PGHCGGGGSI NAVLAFGSRD DGIVGGYTQN LAREINMTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211215PRRRK
2229234RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03703A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0658893e-71BT065889.1 Zea mays full-length cDNA clone ZM_BFc0179C07 mRNA, complete cds.
GenBankBT0663023e-71BT066302.1 Zea mays full-length cDNA clone ZM_BFc0192A04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5W6W21e-43A0A1E5W6W2_9POAL; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.13e-19bHLH family protein