PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_03041A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bHLH | ||||||||
Protein Properties | Length: 260aa MW: 27706.2 Da PI: 10.9743 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40 | 7.2e-13 | 39 | 87 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ h+e+ErrRR+riN +++Lr+++ ++ +k ++Ka+ L A++++k+L Oropetium_20150105_03041A 39 KVQHSEAERRRRERINAHLATLRRMIVPD----AKQMDKATLLASAINHLKDL 87 578*************************7....578***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.49E-13 | 37 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.767 | 37 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-13 | 37 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-10 | 39 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-9 | 43 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 4.9E-5 | 140 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MTKHGGSALP SVCTAAPPKR SASSSSSRRS ATTEARALKV QHSEAERRRR ERINAHLATL 60 RRMIVPDAKQ MDKATLLASA INHLKDLMKR RASEAAPQPP PIPVPAEANG ITVDSGXXXX 120 XXXXXXXDGR TAVIAYIKAS ISCDDRPGLL ADIAAAVRGL GLRPVRAEVA SLGGRTRCSF 180 VLCRVVVGGD VGLMMIKPME EAVRQALATA AFSEVVLVQA GCSSSRSNKR QRILDLEPSR 240 IGKFEKLNDG VKKSTNGES* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 50 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_03041A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809242.1 | 4e-56 | transcription factor bHLH51-like | ||||
TrEMBL | A0A2T7E8P1 | 4e-56 | A0A2T7E8P1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J32610.1.p | 2e-55 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3347 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25710.1 | 5e-16 | basic helix-loop-helix 32 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_03041A |