PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_03033A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

MYB_related

Protein Properties

Length: 250aa MW: 26942.4 Da PI: 10.2474

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_03033A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	5.9e-16	35	79	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE+e++++a ++G + WktI + +g ++t+ q++s+ qky Oropetium_20150105_03033A 35 REKWTGEEHERFLHALLLFGRN-WKTIEQLVG-TKTATQIRSHAQKY 79 789***************66.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.48E-17	29	84	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.047	30	84	IPR017930	Myb domain
SMART	SM00717	3.2E-10	34	82	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	6.8E-16	34	82	IPR006447	Myb domain, plants
Pfam	PF00249	7.4E-13	35	79	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-8	35	79	IPR009057	Homeodomain-like
CDD	cd00167	1.41E-8	37	80	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MTAARNTNTT TGTQTPAAGK IVKKQRKPYT ISRPREKWTG EEHERFLHAL LLFGRNWKTI 60 EQLVGTKTAT QIRSHAQKYF LKVHKLGLAA ALPAPAHHPR RSAVLPRPLL SSQTAAGASV 120 NWMAASSRTT STAGAGAAAA AASWPGHHDD DPFTTTTPNS GGSRSDEASW LLADRLLQDD 180 DAAVQQQLPL SPDDLRFAEV YRFVGDVFGS GASRPVEAQL QRLHGADPVV AEMILLVLRN 240 LQDNLCLGV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_03033A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638954.1	4e-66	protein REVEILLE 8
TrEMBL	A0A2T7E8M7	1e-66	A0A2T7E8M7_9POAL; Uncharacterized protein
STRING	ONIVA05G04710.1	2e-66	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3642	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.2	7e-26	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_03033A