PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02810A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ARF
Protein Properties Length: 676aa    MW: 73259.3 Da    PI: 8.7825
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02810AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.29.5e-21124225199
                                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                f k+lt+sd+++ g +++p+ +ae++        ++           +g  W++++iyr++++r++lt+GW+ Fv++++L +gD
  Oropetium_20150105_02810A 124 FAKTLTQSDANNGGGFSVPRYCAETIfprldyAADP-XXXXXXXXXXHGAAWKFRHIYRGTPRRHLLTTGWSTFVNSKKLVAGD 206
                                89***************************9984444.445788899************************************** PP

                                EEEEEE-SSSEE..EEEEE-S CS
                         B3  79 fvvFkldgrsefelvvkvfrk 99 
                                ++vF   + +++ l+v+++r+
  Oropetium_20150105_02810A 207 SIVFL--RGDGGDLHVGIRRA 225
                                *****..3488999*****97 PP
2Auxin_resp113.91.5e-37279361283
                 Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                                 + as +++Fev Y+Prast+eF+v+++ v++a++v++s+GmRfkmafetedss++++ +Gtv+gv+ +dpvrWp+S+Wr+L+
  Oropetium_20150105_02810A 279 TRLASAGQPFEVAYYPRASTPEFCVRAAAVRAATRVQWSPGMRFKMAFETEDSSRISWfMGTVAGVQVADPVRWPQSPWRLLQ 361
                                678999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-32120227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-24122227IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-17123224No hitNo description
PROSITE profilePS5086311.815124226IPR003340B3 DNA binding domain
SMARTSM010191.9E-15124226IPR003340B3 DNA binding domain
PfamPF023621.3E-18124225IPR003340B3 DNA binding domain
PfamPF065072.1E-32278361IPR010525Auxin response factor
PROSITE profilePS5174511.121611675IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MITFADLTAP AAAAGERFVD RQLWLACAGG MCTVPPVGAS VYYFPQGHAE HAGLSGAADL  60
SAAAALVPPL VPCRVAAVRY MADQDTDEVF ARIRLVPLLR SGXXXXXXXX XXXXXXXXXK  120
PASFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYAADPX XXXXXXXXXH GAAWKFRHIY  180
RGTPRRHLLT TGWSTFVNSK KLVAGDSIVF LRGDGGDLHV GIRRAKRGGF CGGRGDEVAG  240
WDPYNAGLMM RGGNVPPCGG AVKARRANKV RPEDVIEATR LASAGQPFEV AYYPRASTPE  300
FCVRAAAVRA ATRVQWSPGM RFKMAFETED SSRISWFMGT VAGVQVADPV RWPQSPWRLL  360
QVSWDEPDLL QNVKRVSPWL VELVSSIPAI HLASYSPPPK KARRPYPAEF PFEGQLLNPA  420
FPPNPLAHPA HHHPFFHAHP PPFFPFPDGS AHAAIQGARH PQPQSVPSLP DIYLQPSLLY  480
PGLRHPDHVG PTPARINTDL TIGGGTESPR DDVPCALSVG AKRKPDNAVK PAGLMLFGQT  540
ILTGQQMSLS GTTSPAATRT TSSLYWNAEK GGANVSSEGS GSGVIQNSPT NKQASSEQRQ  600
WFMDDHLSEP AGQCKVFMES DTVGRNLDLS SLGSFDELYG RLSEMFCVES AELRSRVLYR  660
GATGQVKHAG DEAFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-721938251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02810A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9553850.0EU955385.1 Zea mays clone 1530377 mRNA sequence.
GenBankHM0045300.0HM004530.1 Zea mays auxin response factor 15 (ARF15) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953169.10.0auxin response factor 8
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A368PP630.0A0A368PP63_SETIT; Auxin response factor
STRINGSi016509m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.11e-152auxin response factor 10