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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Oropetium_20150105_02800A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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| Family |
NAC |
| Protein Properties |
Length: 310aa MW: 33771.6 Da PI: 6.347 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_02800A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 160.2 | 8.2e-50 | 10 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...........kvkaeekewyfFskrdkkyatgkr 73
lppGfrF P+deelv++yL kkv+++++ ++ evd++ ePw+Lp +k + +ewyfFs rd+kyatg+r
Oropetium_20150105_02800A 10 LPPGFRFYPSDEELVCHYLYKKVANQRIAQ-GTLVEVDLHAREPWELPGdtrfgcliiadVAKLTASEWYFFSFRDRKYATGSR 92
79*************************998.88***************5579999988864444778***************** PP
NAM 74 knratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+nratk+gyWkatgkd+ev s ++++vg++ktLvfy+grap+g+k+ Wvmhe+rl
Oropetium_20150105_02800A 93 TNRATKTGYWKATGKDREVRSPaTRAVVGMRKTLVFYQGRAPNGVKSGWVMHEFRL 148
*********************977788***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 310 aa
Download sequence Send
to blast |
MALREIESTL PPGFRFYPSD EELVCHYLYK KVANQRIAQG TLVEVDLHAR EPWELPGDTR 60
FGCLIIADVA KLTASEWYFF SFRDRKYATG SRTNRATKTG YWKATGKDRE VRSPATRAVV 120
GMRKTLVFYQ GRAPNGVKSG WVMHEFRLDA PHSPPTEDWV LCRVFQKTKG DGDGQDGGAG 180
GASSPTLTGS SHVMAPEQEH HASYCGDDQY GGPGFVPQQQ DVAALATSTT AVLPYYGGTA 240
VDRHGSFPRD GLEAGALPVG FEFGARGVVT GDEYGFSGYY FDNMAGFDEM ANHHGLVGGT 300
MGSFPQGWN*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-47 | 7 | 167 | 14 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-47 | 7 | 167 | 14 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-47 | 7 | 167 | 14 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-47 | 7 | 167 | 14 | 165 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-47 | 7 | 167 | 14 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 1e-47 | 7 | 167 | 14 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:11245578, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:12787253, ECO:0000269|PubMed:14617069, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. Directly induced by ESR2 in response to cytokinins. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17287247}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK062955 | 1e-110 | AK062955.1 Oryza sativa Japonica Group cDNA clone:001-109-C12, full insert sequence. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Shinohara N,Ohbayashi I,Sugiyama M
Involvement of rRNA biosynthesis in the regulation of CUC1 gene expression and pre-meristematic cell mound formation during shoot regeneration.
Front Plant Sci, 2014. 5: p. 159
[PMID:24808900] - Kamiuchi Y,Yamamoto K,Furutani M,Tasaka M,Aida M
The CUC1 and CUC2 genes promote carpel margin meristem formation during Arabidopsis gynoecium development.
Front Plant Sci, 2014. 5: p. 165
[PMID:24817871] - Gonçalves B, et al.
A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
Plant J., 2015. 83(4): p. 732-42
[PMID:26119568] - Cui X, et al.
REF6 recognizes a specific DNA sequence to demethylate H3K27me3 and regulate organ boundary formation in Arabidopsis.
Nat. Genet., 2016. 48(6): p. 694-9
[PMID:27111035] - Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
Plant J., 2017. 90(3): p. 435-446
[PMID:28161901] - Koyama T,Sato F,Ohme-Takagi M
Roles of miR319 and TCP Transcription Factors in Leaf Development.
Plant Physiol., 2017. 175(2): p. 874-885
[PMID:28842549] - González-Carranza ZH, et al.
HAWAIIAN SKIRT controls size and floral organ number by modulating CUC1 and CUC2 expression.
PLoS ONE, 2017. 12(9): p. e0185106
[PMID:28934292]
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