PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02689A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 568aa    MW: 58205 Da    PI: 9.2281
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02689AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383e-12503548655
                                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +++Er RR ri +++ +L++l+P+     +k  s a++L +Ave+Ik Lq
  Oropetium_20150105_02689A 503 SIAERERRTRISEKLRKLQDLVPNM----DKQTSTADMLDLAVEHIKGLQ 548
                                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.748497547IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15500561IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.81E-13501552No hitNo description
Gene3DG3DSA:4.10.280.101.9E-14502560IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9503548IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-14503553IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MMRRFMPGGR GGGEPSFSSS RAERGGDRAA AAAAMRYGGG GGEPSSSSSH AERGGDRAAA  60
AAAMRYGGGG GEPSSSSSHA ERGGDRAAAA AAMRYGGGGG EPSSSSSHAE RGGDRAAAAA  120
AMRYGGGGGE PSSSSSHAER GGDRAAAAAA MRYGGGGGEP SSSSSHAERG GDRAAAAAAM  180
RYGGGGGEPS SSSSHAERGG DRAAAAAAMR YGGGGGEPSS SSSHAERGGD RAAAAAAMRY  240
GGGDISLGHH GHDGGHHPQL GIGGGGEAPE RHHDGSMDML ARHSSSPAGF FSNLVMDNGK  300
LHFVLLLQPR HGVNNANDSS SPYYYPALLR RIAQCVIFLY PSVVGINNAG YPSSKAGGSG  360
AEPPHHHSTA NNVRKMKPSS QLNFTXXXXX XXXXXXGAPG HFEDGGGFPQ PGLMVGGDRA  420
GRSSGENSGA ASRSFSGGFS IVGPWEESRD IIATLGTYDP QFNGAMASTA LEMAGMDRFM  480
QLQQDQVPFK VRAKRGCATH PRSIAERERR TRISEKLRKL QDLVPNMDKQ TSTADMLDLA  540
VEHIKGLQSE LQTLKHEQEK CTCCRKR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02689A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547251e-102EU954725.1 Zea mays clone 1479278 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452412.11e-110transcription factor bHLH80
TrEMBLA0A1E5USQ61e-109A0A1E5USQ6_9POAL; Transcription factor bHLH128
STRINGPavir.Aa01423.1.p1e-109(Panicum virgatum)
STRINGSb04g025260.11e-109(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-43bHLH family protein