PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

M-type_MADS

Protein Properties

Length: 94aa MW: 10494.1 Da PI: 10.3591

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_02560A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.8	6.8e-29	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrngi+KKA+EL +LCdaev ++ifsstg+lyeyss Oropetium_20150105_02560A 10 RIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSS 59 8***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.2E-39	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.651	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.10E-44	2	77	No hit	No description
SuperFamily	SSF55455	4.45E-33	2	83	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-28	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-28	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-28	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KAKELAILCD AEVGLMIFSS TGRLYEYSST 60 SMKSVIERYG KAKEEQQVAA NPNSELKDYG IQV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-22	1	83	1	83	MEF2C
5f28_B	2e-22	1	83	1	83	MEF2C
5f28_C	2e-22	1	83	1	83	MEF2C
5f28_D	2e-22	1	83	1	83	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_02560A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728167	2e-94	KJ728167.1 Zea mays clone pUT6437 MADS transcription factor (MADS39) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020393156.1	9e-57	MADS2 isoform X1
Swissprot	Q6EP49	1e-54	MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBL	A0A368PPS0	1e-54	A0A368PPS0_SETIT; Uncharacterized protein
STRING	Pavir.Ab02020.1.p	9e-55	(Panicum virgatum)
STRING	Sb04g024010.1	1e-55	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	6e-45	AGAMOUS-like 21

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_02560A

Publications ? help Back to Top
Puig J, et al. Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice. Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70 [PMID:23466806] Yu C, et al. The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice. PLoS ONE, 2014. 9(8): p. e105597 [PMID:25140876]