PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02529A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 443aa    MW: 47627.9 Da    PI: 7.9274
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02529AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.84.8e-07233254223
                                EETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                 C++Cgk F+r  nL+ H+r H
  Oropetium_20150105_02529A 233 FCEICGKGFRRDANLRMHMRAH 254
                                6*******************99 PP
2zf-C2H212.20.00056318342123
                                EEETTTT..EEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                                y C+ Cg  k+F    +L++H+r +
  Oropetium_20150105_02529A 318 YACERCGgkKRFAVLADLRSHLRHC 342
                                89********************987 PP
3zf-C2H210.80.0015352367621
                                TTEEESSHHHHHHHHH CS
                    zf-C2H2   6 CgksFsrksnLkrHir 21 
                                Cg++Fsrk+ L  H+ 
  Oropetium_20150105_02529A 352 CGTTFSRKDKLFGHMA 367
                                **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.98E-6229254No hitNo description
Gene3DG3DSA:3.30.160.608.5E-6232254IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0017232254IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.676232254IPR007087Zinc finger, C2H2
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
SMARTSM00355180280313IPR015880Zinc finger, C2H2-like
SMARTSM0035517318341IPR015880Zinc finger, C2H2-like
SMARTSM00355210348372IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MASVLQSLRT ETGRGMTVPA AHAIARSPRS DVVRSHGKKA PNLKFQVGYH HSIHPLAMGS  60
TTHQLAGAAV SAQVAFASRA TSAVASMTVP GGAPSEAGGG DGDPRTALLR LAALGDHMAS  120
VRRRIAASLS GESLPLTAAD IHSVSSEISX XXXXXXXXXX SLLASSVPVP APSPSPPSPP  180
PPPAYTPAPA PIQEHLAASA SAQERPQMVA KGDSAYDVVE LDADELLAEH IHFCEICGKG  240
FRRDANLRMH MRAHGDRFKT LDALSRPCLP KQLGGRDLRF SCPSEGCNRN RAHRRFRPLK  300
SAVCARNHFR RSHCPKLYAC ERCGGKKRFA VLADLRSHLR HCGEEAQWRC SCGTTFSRKD  360
KLFGHMALFE GHTPAVTEPN KGVVSESTEA QLEPMEEGGV EGNGDREEDE EGGYESVFFK  420
EWMDELRDGA AGSNWHEPAA AW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02529A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794886.11e-168protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A1E5VDK31e-174A0A1E5VDK3_9POAL; Zinc finger protein STOP1-like protein
STRINGOPUNC02G19290.11e-166(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.14e-69C2H2 family protein