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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Oropetium_20150105_02502A |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family |
Trihelix |
Protein Properties |
Length: 396aa MW: 42371.8 Da PI: 10.2639 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Oropetium_20150105_02502A | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 48.4 | 2.4e-15 | 62 | 143 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpy 81
W++ + aLi+a e+ +l+rg+l+ p+W+ev++++ ++ g+++ s +qCk++++ l+k+yk +k+ + ++p+
Oropetium_20150105_02502A 62 WSDGATSALIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKapkSDVQCKNRIDTLKKKYKVEKAKHDS-------SWPF 138
*************************************87788876222667***************9998886.......5*** PP
trihelix 82 fdqle 86
f++l+
Oropetium_20150105_02502A 139 FHRLD 143
***98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 396 aa
Download sequence Send
to blast |
MDDDAGASPS PSPSPSRSPS PLPVADPVTV AAAPPGHVAV AIPLRKPSPS SGGGGGGRED 60 AWSDGATSAL IDAWGERFVA LGRGSLRHPQ WQEVAEVVSS RDGYSKAPKS DVQCKNRIDT 120 LKKKYKVEKA KHDSSWPFFH RLDDLLAPVY KLGSGSSSAA RSASPMVPPR FSFPQRTRTP 180 LQPSAGAKRR MPSPPPQPSA SSDSSDGFPP EPPFATVPPL ATVANGKRQR VEEPVPANGA 240 ESSDRAQGLR ELAQAIRRLG DVYERVEGAK REQELRMERE RLEAARELEE QRVQFFLKMQ 300 MELSKATGGA SSAMPVAVAT AVDGNGSRRA AMATDAATTS NHKVRYRIKD IRHRHSAPQS 360 HYENNASTAA PASGKGSDSX XXXXXXXXXX XXXSQ*
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G14180.1 | 9e-33 | sequence-specific DNA binding transcription factors |