PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02498A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 500aa    MW: 52751.7 Da    PI: 4.7391
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02498AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.2e-12311356555
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                h+++Er RR++i +++ +L+el+P++      K +Ka++L + ++Y+k Lq
  Oropetium_20150105_02498A 311 HSIAERLRREKISDRMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQ 356
                                99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.57E-13304360No hitNo description
SuperFamilySSF474592.62E-17304367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.441306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-17308366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9311356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-14312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MAGFVDPFTA APAWSQDLAF AGSSWSSGSG ASSLADSAEL EFHHLQNGSS SALLNKEAAS  60
PPLELHDEQF LQQQLRQGHL THGLSSFAVD SALMAGTLGE ILSTPCAPTL CSNNDSSGSE  120
ESGLLPPFLL EEQHQVPAPA VAWSSAFSQI ASSLDGEETS QTSFGFGSLS NGDLLHENCI  180
PDGKKYLQLG NVSSAPLQLQ EDVKYNTGNM LSFAPGQQQL KTNFENLQID RKEFSGLHHL  240
NLSSLVSGQL SAFNATGAAL DAKQSNEVRG GINVPTTATS SEAPNGNVAA GNGGVAKPRV  300
RARRGQATDP HSIAERLRRE KISDRMKNLQ ELVPNSNKTD KASMLDEIID YVKFLQLQVK  360
VLSMSRLGAT EAVVPLLTES QTESSGLLLS PKSGSKTAGE DVLGHGQSSE LHDGAAFEQE  420
VVQLMENNMT TAMQYLQSKG LCLMPIALAS AISDQKGTSS AAVRPVPDNG DAADDGGDVK  480
KVSETLKPFG IAMEMRSRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02498A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749567e-79EU974956.1 Zea mays clone 461679 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799151.10.0uncharacterized protein LOC112879044
TrEMBLA0A2T7F7X00.0A0A2T7F7X0_9POAL; Uncharacterized protein
STRINGPavir.Aa01634.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-56LJRHL1-like 3