 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_02318A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 259aa MW: 28680.6 Da PI: 4.6835 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_02318A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 62.9 | 4.7e-20 | 77 | 130 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t+eq++ Le+ Fe+++++ e+++eLA++lg+ rqV vWFqNrRa++k
Oropetium_20150105_02318A 77 KKRRLTTEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWK 130
56789************************************************9 PP
|
| 2 | HD-ZIP_I/II | 133.3 | 8.7e-43 | 76 | 168 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84
ekkrrl++eqv++LE+sFeee+kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+d+++Lk+aydal+++++ L++++
Oropetium_20150105_02318A 76 EKKRRLTTEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLETDFDRLKAAYDALAADHQGLRADN 159
69********************************************************************************** PP
HD-ZIP_I/II 85 eeLreelke 93
++Lr+++++
Oropetium_20150105_02318A 160 DRLRAQVTS 168
****99975 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 259 aa
Download sequence Send
to blast |
MDPGSTGFDS GGARRGGGPQ MLLFGGGGSA NSNGFIRGVP MAVLGRDDDA RVGKRPFFTT 60
HEELFEEEYY DEQAPEKKRR LTTEQVQMLE RSFEEENKLE PERKTELARR LGMAPRQVAV 120
WFQNRRARWK TKQLETDFDR LKAAYDALAA DHQGLRADND RLRAQVTSLT EKLQGKVTSP 180
SATTTVQEVD HSDDHTNISD PEKLLVQQVK EAHGALSSEE EDGGVVSDEG CSFDFPDALF 240
TVGPAEAQLG SLASWFWN*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 124 | 132 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
