 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_02255A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
TCP |
| Protein Properties |
Length: 205aa MW: 22516.5 Da PI: 7.8855 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_02255A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 109.1 | 6.6e-34 | 38 | 105 | 3 | 70 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70
++drhski T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ l + + +a
Oropetium_20150105_02255A 38 LRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDRLGFDKASKTVNWLLTQSKPAIDRLCDAAAAPA 105
689*********************************************************99955555 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 205 aa
Download sequence Send
to blast |
QQDQAVVQQQ QDGVPLLLAA VDDDGAARAA AVTRRRPLRT DRHSKIRTAQ GVRDRRMRLS 60
VGVARDFFAL QDRLGFDKAS KTVNWLLTQS KPAIDRLCDA AAAPAGGPPL VKKGKGDVNS 120
TSTGCCLKDT RERVMRSRGP LDAPVAALME MEDRHGCELD WNMSEAVAAT ELTTQPMDDR 180
LEYDHYHQLE ELIVRCNNGG VLPR*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT063457 | 6e-71 | BT063457.1 Zea mays full-length cDNA clone ZM_BFc0065H12 mRNA, complete cds. |
| GenBank | EU975636 | 6e-71 | EU975636.1 Zea mays clone 494952 teosinte branched1 protein mRNA, complete cds. |
| GenBank | KJ726896 | 6e-71 | KJ726896.1 Zea mays clone pUT3439 TCP transcription factor (TCP15) mRNA, partial cds. |
