 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_02243A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
G2-like |
| Protein Properties |
Length: 300aa MW: 32643.3 Da PI: 6.1079 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_02243A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 92.3 | 4.1e-29 | 27 | 81 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
+prlrWt +LH++ v av++LGG+ekAtPk++l++m+v+gLtl+h+kSHLQkYRl
Oropetium_20150105_02243A 27 RPRLRWTRQLHDQLVLAVSELGGAEKATPKSVLRAMDVPGLTLHHLKSHLQKYRL 81
59****************************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MVLGTLEISS SGGYAQQSGG GGEAAGRPRL RWTRQLHDQL VLAVSELGGA EKATPKSVLR 60
AMDVPGLTLH HLKSHLQKYR LAVSRGLATS PLADNGEVQD DRSSSSSENQ PDEYDEDTDR 120
AFANNDADVP AFKRSTTSAT DSSRSVAWMQ RDVHRNLQAQ MEVQKHLQLR IEAQGRYLQS 180
VLRRAQEVLV DQGLRSPEAE LSELASAAAS TSSSLSLSPP RHRYADSCVT XXXXXXXXXX 240
XSKAGAKRLC TCADTRECTV EQPVQSKTAV LQRHRQQQGD AEEEEAEAGN GSSEIDLNR*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4k_A | 3e-17 | 26 | 85 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 3e-17 | 26 | 85 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 3e-17 | 26 | 85 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 3e-17 | 26 | 85 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 3e-17 | 26 | 85 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 3e-17 | 26 | 85 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 3e-17 | 26 | 85 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 3e-17 | 26 | 85 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FP095207 | 3e-58 | FP095207.1 Phyllostachys edulis cDNA clone: bphyem201h10, full insert sequence. |
