PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02228A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ZF-HD
Protein Properties Length: 388aa    MW: 40478.4 Da    PI: 7.5281
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02228AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer91.76.6e-294397557
                ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegee.gt.aaalkCaACgCHRnFHRrev 57
                               +Y eCl+NhAas Gg++vDGCgEfmp++    ++ aa+l+CaACgCHR+FHRr  
  Oropetium_20150105_02228A 43 VYLECLRNHAASAGGYVVDGCGEFMPAPAGLaADpAASLRCAACGCHRSFHRRVI 97
                               79*************************87765444789***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-13795IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.1E-254495IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.7124496IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.2E-254496IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.79E-15237301IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-28237302IPR009057Homeodomain-like
TIGRFAMsTIGR015659.1E-24243299IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEAVVDVKYR PALYRYGGMV EPTKFGSPAS ATAWGEAIET PGVYLECLRN HAASAGGYVV  60
DGCGEFMPAP AGLAADPAAS LRCAACGCHR SFHRRVITEI GPPLSSSPPP RLALLPAPPA  120
PSAVVAAAAP HLRRGEGPPE GHAPAADGWD ETDEESSDYD DGAGRPMSPL QAPAPAVAPP  180
SGGYVLAPAP PLTLLPSLNT VAPAASVTSP ASASALAAAS SRPPAPAPQG IIMVPGGSLA  240
AARKRFRTKF SPEQKQRMRE LSERLGWRLQ KRDEAAVEDC CREIGVARSV FKVWMHNNKH  300
NFVDGNSARR AASSAPVASM PVPVPAAPVQ XXXXXXXXXX XXXXXXXXXX XXVVHADFNI  360
NNSGAADYYV LQPVIATTMS GGAPQHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-212443011875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02228A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880073e-65AK288007.1 Oryza sativa Japonica Group cDNA, clone: J075112P06, full insert sequence.
GenBankAP0047023e-65AP004702.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0524F03.
GenBankAP0051593e-65AP005159.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016C11.
GenBankAP0149643e-65AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126163e-65CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankEU9640703e-65EU964070.1 Zea mays clone 275696 ZF-HD homeobox protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ6Z5289e-59ZHD10_ORYSJ; Zinc-finger homeodomain protein 10
TrEMBLA0A0A8ZJE74e-78A0A0A8ZJE7_ARUDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.13e-23homeobox protein 34