PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02037A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 713aa    MW: 79921 Da    PI: 5.068
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02037AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.2e-08109132327
                                S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                +++C +f++ G C  GdrC+F Hgp
  Oropetium_20150105_02037A 109 MVPCYYFQK-GNCIKGDRCPFYHGP 132
                                789******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.692554IPR000571Zinc finger, CCCH-type
SMARTSM003560.00512653IPR000571Zinc finger, CCCH-type
PfamPF156631.3E-122781No hitNo description
PROSITE profilePS5010311.3755682IPR000571Zinc finger, CCCH-type
SMARTSM003560.235881IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.901106133IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-6106132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5107131IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5108132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4110132IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MEVDGAAAAG QAASAKPLTP EEESLRRNTD CVYFLASPLT CKKGNECDFR HSEGARMNPR  60
DCWYWMNGNC LNPKCSFRHP PIDGLFGAPT PGVPSVSSHY GAYNSGKQMV PCYYFQKGNC  120
IKGDRCPFYH GPQAVGNNPP EQVAKVSSFP LEQPQAQKNE ASAELNNSMQ QSAPIIGDRS  180
KLAADRSMVH AAKNGVAAVP NELTSNAVKS RLKSGKAPNM PAVSKSFMGP EEDHSTCYQN  240
QLPLESDAIQ DWSQDCPMPP TDDLPQNSRE ADDFLGESSP GFDVLVDNDV DGAAYLHDDE  300
DFGRDMYPVE DYDYTPADFD MQAHHERERF NGMSEQSQIG QLYDGYERKR RRSSSERSMD  360
RPFHSDRRFL HGEIDRADMD RSDLRHQLRR RRINGSSAAI SPERNGGPHR RDGRYRERAY  420
GGHDTHRDRH QGPRGSTLSS RLVGRIKLPG RSPDRVDTRF ENERDRKRLR DRLSPRHVDY  480
GVRHQGSGQY HERSLRKSSE LSSSIRHADG RYLRRDAVNS VHIIAQKNLG EPRKANGIMD  540
SEPSLDFEGP KPLSVILQKK REAAVSNNSS SSGEKSVVAA DRQPDSLVEA EKKDYDNIMN  600
SEYCKSGSGD EEDQAPLEGQ GQSSSHGDKF DVEDTTEVDT NQELENYDQG EGEFDDYETI  660
EGHEYKSEDE NGYQDDEDFD DDDDDFAQKV GASTTEHIRA NWGTVRDLKD TQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347351RKRRR
2347352RKRRRS
3465471RKRLRDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02037A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823987.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A3L6PV300.0A0A3L6PV30_PANMI; Uncharacterized protein
STRINGPavir.J37523.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]