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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_01991A |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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| Family |
C3H |
| Protein Properties |
Length: 304aa MW: 31476.3 Da PI: 9.9083 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_01991A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 24.2 | 6.1e-08 | 105 | 130 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C + Ck+G++C+FaHg+
Oropetium_20150105_01991A 105 KTRMCTKYNTAEGCKFGEKCHFAHGE 130
9***********************96 PP
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| 2 | zf-CCCH | 38.1 | 2.6e-12 | 271 | 296 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
ykt+lC +f + GtC +GdrC+FaHg+
Oropetium_20150105_01991A 271 YKTKLCENFVK-GTCTFGDRCHFAHGE 296
9**********.*************96 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 8.7E-7 | 33 | 62 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.493 | 37 | 65 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.66E-5 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.3 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF14608 | 0.34 | 45 | 62 | No hit | No description |
| SuperFamily | SSF90229 | 9.42E-8 | 103 | 134 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.27 | 103 | 130 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.45 | 103 | 131 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.2E-12 | 105 | 135 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.6E-4 | 105 | 130 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:3.30.1370.10 | 3.8E-14 | 170 | 241 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 2.4E-9 | 171 | 241 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 14.529 | 172 | 236 | IPR004088 | K Homology domain, type 1 |
| SuperFamily | SSF54791 | 3.21E-14 | 174 | 265 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 1.9E-10 | 174 | 237 | IPR004088 | K Homology domain, type 1 |
| SuperFamily | SSF90229 | 1.83E-9 | 269 | 300 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.2E-15 | 269 | 300 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.4E-8 | 270 | 296 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 17.516 | 270 | 297 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 8.4E-10 | 271 | 296 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 304 aa
Download sequence Send
to blast |
MEGAAAARKR SRPDTANGVS AGGKRLRDTE SIQTGQSSKS KPCTKYFSTV GCPFGEGCHF 60
SHFVPGGYPA VAKMLNLGGN AVSAPTRVPV DHAVAANSHS ASTGKTRMCT KYNTAEGCKF 120
GEKCHFAHGE RELGKPAYMS HDGPSMGGRF GGRPEPHPQT PMGPPAGNFG ASATAKISVD 180
ASLAGGIIGK GGGNTKHISR VTGVKLSIRD HESDPNLKNI ELEGNFDQIK QASNMVSDLI 240
ASISIGMPAK NPSGATTAAR GGGGPGGRSN YKTKLCENFV KGTCTFGDRC HFAHGESEQR 300
RGV*
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