 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_01988A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
G2-like |
| Protein Properties |
Length: 369aa MW: 39882.1 Da PI: 7.0289 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_01988A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 92.7 | 3.1e-29 | 220 | 270 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
k+r+rWt++LHerFv++v+qLGG++kAtPk il+lm+ +gLt++h+kSHLQ
Oropetium_20150105_01988A 220 KTRIRWTQDLHERFVDCVNQLGGADKATPKGILKLMNSDGLTIYHIKSHLQ 270
68************************************************* PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 369 aa
Download sequence Send
to blast |
MNAKKIKLHD HHYGSQMCDP QVFQGASAGL SFQPGFVSSV PQQNGGAGSW PHEEYSPTPR 60
SVLAAQGGCV GSDTAAFFAA EHLLGMAPMA ALKTSPFGRS PEADLLYRSV DLPLLRDDSV 120
RTYYVPPQPR DAAKAPPALK LPLQQEQVHG LCANASTALL LGGEHQNHPF SPRVAASTLL 180
PAMETPSMLN SMDSTSSRSC SMVAPTAPTG NVVTAPAPSK TRIRWTQDLH ERFVDCVNQL 240
GGADKATPKG ILKLMNSDGL TIYHIKSHLQ DALPCSGEQI TQALRVQLDV QRRLHEQLEI 300
QRNLQLKIEE QGKKLQKMFE EQLKASKSVH GASFAGVSEQ ERDAYDDVQL LSVSSSDHND 360
VSFPSKIS*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4k_A | 6e-19 | 220 | 270 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 6e-19 | 220 | 270 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 6e-19 | 220 | 270 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 6e-19 | 220 | 270 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 6e-19 | 220 | 270 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 6e-19 | 220 | 270 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 6e-19 | 220 | 270 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 6e-19 | 220 | 270 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 6e-19 | 220 | 270 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 6e-19 | 220 | 270 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 6e-19 | 220 | 270 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 6e-19 | 220 | 270 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK101951 | 1e-51 | AK101951.1 Oryza sativa Japonica Group cDNA clone:J033075I07, full insert sequence. |
| GenBank | CT830983 | 1e-51 | CT830983.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA208P17, full insert sequence. |
