PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01917A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family AP2
Protein Properties Length: 415aa    MW: 44306.7 Da    PI: 6.7965
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01917AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.81.9e-11134190155
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Oropetium_20150105_01917A 134 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 190
                                57*******************5444.2455536655.779999**************98 PP
2AP248.42.3e-15233284155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Oropetium_20150105_01917A 233 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 284
                                57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.19E-18134200No hitNo description
PfamPF008476.6E-9134190IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-15134199IPR016177DNA-binding domain
SMARTSM003805.4E-21135204IPR001471AP2/ERF domain
PROSITE profilePS5103217.372135198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-12135199IPR001471AP2/ERF domain
PRINTSPR003671.9E-6136147IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-18233294IPR016177DNA-binding domain
PfamPF008474.9E-10233284IPR001471AP2/ERF domain
CDDcd000184.09E-24233294No hitNo description
SMARTSM003802.1E-33234298IPR001471AP2/ERF domain
PROSITE profilePS5103219.348234292IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-18234292IPR001471AP2/ERF domain
PRINTSPR003671.9E-6274294IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MDTSHNYPWL NFSLAHHCDL EEQERGAAAE LAAIAGAAPP PKLEDFLGGG NNHQVSGGAA  60
TTAPPAPEMY DSELKFIAAG FLSGAAGPXX XXXXXXXXSP LDQADAKLAL PAAAAAAPAQ  120
EQRKAVDSFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQSRKGRQGG YDKEEKAARA  180
YDLAALKYWG ATTTTNFPVA EYEKELEEMK NMTRQEFVAS LRRKSSGFSR GASIYRGVTR  240
HHQHGRWQAR IGRVAGNKDL YLGTFSTEEE AAEAYDIAAI KFRGLNAVTN FEISRYNVES  300
IISSNLPIGS MSAGGRSTKG LECAASGSPD AAPMPGGEVS TAPTAFSALP VKYDQQQDYL  360
SMLALQHHQQ GNLQGLGFGL YSSGVNLDFA SSGGGGGGGG GALAHCYALS VEFL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01917A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318155.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-129AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A1B6PNN90.0A0A1B6PNN9_SORBI; Uncharacterized protein
STRINGSb06g031120.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-122AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]