PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

MIKC_MADS

Protein Properties

Length: 236aa MW: 27548.3 Da PI: 8.2134

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_01682A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.7	3.9e-15	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvtfskRr g LCda++ viifs +gk+yeyss Oropetium_20150105_01682A 9 KKIENPTNRQVTFSKRRMGXXXXXXXXXXLCDAQIGVIIFSGSGKMYEYSS 59 68***********************************************96 PP
2	K-box	50.1	1.2e-17	85	161	14	90
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 +++ +e++++k+e ++Lq +++GedL+ Lsl + +LeqqLe sl k+R +K+ell +q+ e++++e +e Oropetium_20150105_01682A 85 QQKIIREMTRMKDERNKLQIMMSQYMGEDLNLLSLHHVTSLEQQLELSLYKVRLRKQELLDQQLIEMRHREMHDSEV 161 578889****************************************************************9876654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.2E-22	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.408	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.97E-21	2	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-20	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-13	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-20	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-20	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	2.9E-14	82	158	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	11.98	85	178	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MGRGKVELKK IENPTNRQVT FSKRRMGXXX XXXXXXXLCD AQIGVIIFSG SGKMYEYSSP 60 PWRIANIFDR YLKAPSTRFD EMDIQQKIIR EMTRMKDERN KLQIMMSQYM GEDLNLLSLH 120 HVTSLEQQLE LSLYKVRLRK QELLDQQLIE MRHREMHDSE VQSNSLCLMT QSGEMVTNPK 180 PFPWWDVGGS QQLFVHDVEQ SVTALQLLPQ LGEYKLQPLQ PNLQEANLQS YVLRL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_01682A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF469332	2e-99	KF469332.1 Brachypodium distachyon MADS-box transcription factor 38 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822902.1	1e-114	MADS-box transcription factor 31-like isoform X1
Refseq	XP_025822903.1	1e-114	MADS-box transcription factor 31-like isoform X1
Refseq	XP_025822904.1	1e-114	MADS-box transcription factor 31-like isoform X1
Refseq	XP_025822905.1	1e-114	MADS-box transcription factor 31-like isoform X2
Swissprot	Q84NC2	5e-77	MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBL	A0A0E0KV53	1e-114	A0A0E0KV53_ORYPU; Uncharacterized protein
STRING	Pavir.Gb00526.1.p	1e-119	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1850	37	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.2	1e-35	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_01682A

Publications ? help Back to Top
Schilling S, et al. Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa). Plant J., 2015. 84(6): p. 1059-72 [PMID:26473514]