PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01601A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Trihelix
Protein Properties Length: 663aa    MW: 73872.8 Da    PI: 9.8081
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01601AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.73.5e-24409491186
                   trihelix   1 rWtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                                +W  qe+++Li+ar +me++   +++++k+ We+v++++rerg++r++ qCk+kw+nl++ryk  ++++ ++     ++cp+f+
  Oropetium_20150105_01601A 409 QWGVQETRELITARGDMERETLpARRSAKTTWEAVAERLRERGYRRTADQCKCKWKNLSNRYKGKETSDPNN----GRQCPFFE 488
                                7*****************8876267899************************************99999984....668***** PP

                   trihelix  84 qle 86 
                                +l+
  Oropetium_20150105_01601A 489 ELH 491
                                *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122036.64E-19408474No hitNo description
PfamPF138372.9E-22409492No hitNo description
PROSITE profilePS500907.178410467IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000023Biological Processmaltose metabolic process
GO:0005983Biological Processstarch catabolic process
GO:0007154Biological Processcell communication
GO:0007275Biological Processmulticellular organism development
GO:0009624Biological Processresponse to nematode
GO:0009629Biological Processresponse to gravity
GO:0009706Cellular Componentchloroplast inner membrane
GO:0005363Molecular Functionmaltose transmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MSAPTLRLPL RPSATPPXXX XXXXXXXGAG FLAPLLVKPL ASFGAPASHC RPAPLAHQRL  60
RRHGPPVVAA TTASRPVLKD PKKYEEWDSL TAKFAGAANX XXXXXXXXXI VLNARNLLAG  120
NKTALFAVPW LGMLTGLLGN LSLLSYFAKK KETGAVIVQT LGVISTYAVL VQLAMAESMP  180
APQFVATSAV VAAGLLLNFL NYLGWLPGTL WLLWEDFITV GGLAVLPQVM WSTFVPFIPN  240
SVLPGLISGS VAVAAVAMAR MGKLSEEGAK FVGSLSGWTA TLLFMWMPVA QMWTNYLNPS  300
NIKGLSAFSM LLAMLGNGLM IPRAAEAGSG EKQEEKAWQA ETDQQANRDK KAGEREEPAA  360
SGRRRCRVVG PRFCRNCCCQ VSGVAPRAAG GGEMMEAGGA RGRDERVPQW GVQETRELIT  420
ARGDMERETL PARRSAKTTW EAVAERLRER GYRRTADQCK CKWKNLSNRY KGKETSDPNN  480
GRQCPFFEEL HAVFTERARN MQRHLLESES GASAKRKLKR PSGNQSSEES DAEGDCGEES  540
EDDKPIHSRK RRTEDKKQPP HRMSEKSRTG ASSIQDLLQD FLVQQQHIDI QWREMMERRA  600
QERLVFEQEW RQSMQKLEQE RLMLEHSWIE REEQRRIREE ARAEKRDALL TTLLNKLLQE  660
DL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1547552SRKRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01601A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP720622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.17e-23Trihelix family protein