PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

MYB

Protein Properties

Length: 354aa MW: 38157.5 Da PI: 4.3856

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_01559A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.1e-16	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ ++++G +W++ ++ g+ R++k+c++rw +yl Oropetium_20150105_01559A 16 KGSWTPEEDMRLIAHIQKYGHANWRALPKQAGLLRCGKSCRLRWINYL 63 799***************************99**********97 PP
2	Myb_DNA-binding	49.2	1.2e-15	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++ +++++ +lG++ W++Ia+ ++ gRt++++k+ w+++l Oropetium_20150105_01559A 69 RGNFTADEEQTIIKLHGMLGNK-WSKIAASLP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.6E-24	7	66	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.644	11	63	IPR017930	Myb domain
SuperFamily	SSF46689	1.46E-29	13	110	IPR009057	Homeodomain-like
SMART	SM00717	5.6E-13	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-14	16	63	IPR001005	SANT/Myb domain
CDD	cd00167	4.29E-11	18	63	No hit	No description
PROSITE profile	PS51294	24.846	64	118	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-25	67	117	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-13	68	116	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-14	69	114	IPR001005	SANT/Myb domain
CDD	cd00167	2.79E-10	71	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MGKGRAPCCA KVGLNKGSWT PEEDMRLIAH IQKYGHANWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDLKRG NFTADEEQTI IKLHGMLGNK WSKIAASLPG RTDNEIKNVW NTHLKKRAVT 120 IPSPSPASST TTATTTNWSN GDDSSGEQQS NASKEPDDLL EHLDIPMLDA ACFDFDMLVD 180 PVPELSSYYP SVSAPTSPCA SSSTSQPPAP APPRGGVEDD MLELPPESVD IDQELWSIID 240 ADGGVGIVSE PPAAAAPCHV NATGEADATA ATTSQQNQEE EGNQWWLENL ERELGLWGPM 300 EQDNQYLADP LGVAHPDPLP AMVQDPVNCY FQAGPTTATF PAAGDDGLTS NRM*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MGKGRAPCCA KVGLNKGSWT PEEDMRLIAH IQKYGHANWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTADEEQTI IKLHGMLGNK WSKIAASLPG RTDNEIKNVW NTHLKKRAVT  120
IPSPSPASST TTATTTNWSN GDDSSGEQQS NASKEPDDLL EHLDIPMLDA ACFDFDMLVD  180
PVPELSSYYP SVSAPTSPCA SSSTSQPPAP APPRGGVEDD MLELPPESVD IDQELWSIID  240
ADGGVGIVSE PPAAAAPCHV NATGEADATA ATTSQQNQEE EGNQWWLENL ERELGLWGPM  300
EQDNQYLADP LGVAHPDPLP AMVQDPVNCY FQAGPTTATF PAAGDDGLTS NRM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-28	14	118	25	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269\|PubMed:7920701}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00249	DAP	Transfer from AT1G79180	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_01559A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK111960	1e-124	AK111960.1 Oryza sativa Japonica Group cDNA clone:001-031-D02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824709.1	1e-141	myb-related protein Zm1-like
Swissprot	P20024	1e-102	MYB1_MAIZE; Myb-related protein Zm1
TrEMBL	A0A2S3I9V4	1e-140	A0A2S3I9V4_9POAL; Uncharacterized protein
STRING	Pavir.Ga00752.1.p	1e-140	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2154	37	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	1e-67	myb domain protein 63

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_01559A

Publications ? help Back to Top
Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701]