PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01533A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 345aa    MW: 37926.4 Da    PI: 8.1311
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01533AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-1383134155
                                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +r++h ++Er+RR+++N+ ++ Lr+l+P++   +  + + a+i+  A++++k+L+
  Oropetium_20150105_01533A  83 QRMTHIAVERNRRRQMNEYLAALRSLMPES---YVHRGDQASIVSGAIDCVKELE 134
                                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.17E-1181138No hitNo description
PROSITE profilePS5088814.80582133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-1683155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1383153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-1183134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-1088139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.558254331IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MTLQEKEALC TPSSSDVLIY DTFNAAACAA SSWAGGLLVG DSAAPAAATP AQEGEISRVQ  60
QKGRRKRRRR ERSVKNREDA EVQRMTHIAV ERNRRRQMNE YLAALRSLMP ESYVHRGDQA  120
SIVSGAIDCV KELELQLQSL EAKKRALRMA HQQQQRNDNS MAGERDVDKA PKPITNSRSD  180
ASENGEEEEV AAPRPQQPSS PPFSRFFRYP QYVWRQQQAL ARDXXXXXXX XXXSRCASGV  240
ADVEASVVVD AHASVRVLAP RRPGQLLKMV AGMQALKLSV LHLSVVTAAD ALVLYTISLK  300
VEEGCALTTA DEIAAAVHHA LCIIEAEAMA QQRAFSPPDL SYYS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16369RRKRRRR
26370RRKRRRRE
36468RKRRR
46471RKRRRRER
58394RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01533A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319605.11e-102transcription factor bHLH96-like
TrEMBLA0A1B6PMY01e-101A0A1B6PMY0_SORBI; Uncharacterized protein
STRINGLPERR04G19210.12e-93(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.12e-27bHLH family protein