PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

MIKC_MADS

Protein Properties

Length: 291aa MW: 32922.4 Da PI: 9.0833

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_01474A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.5	1.3e-31	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+i+fss+gklye+ Oropetium_20150105_01474A 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEFG 58 79**********************************************95 PP
2	K-box	15.1	9.3e-07	105	128	13	36
K-box 13 kaeslqqelakLkkeienLqreqR 36 +++s++qe+++Lk++ e+Lqr+qR Oropetium_20150105_01474A 105 DSKSWYQEISRLKAKFESLQRSQR 128 5799******************99 PP
3	K-box	71	3.6e-24	149	213	35	99
K-box 35 qRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +Rh+lGedL++Ls+keLqqLe+qLe +l++ R++K+++++eq++el++ke++l e nk+L+++le Oropetium_20150105_01474A 149 LRHMLGEDLGPLSIKELQQLEKQLEYALSQARQRKTQIMMEQMDELRRKERQLGELNKQLKNQLE 213 59************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.529	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.6E-41	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.07E-45	2	78	No hit	No description
SuperFamily	SSF55455	5.23E-33	2	76	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-32	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.6E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-32	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-32	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	15.144	106	218	IPR002487	Transcription factor, K-box
Pfam	PF01486	7.4E-21	149	212	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048437	Biological Process	floral organ development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIVFSS RGKLYEFGSA 60 GVNKTLEKYH NCCYNHGQGS NNGFGGEPQL EVVRMHASKY VSLFDSKSWY QEISRLKAKF 120 ESLQRSQRTD DYSSRYLLHY VISTYFLFLR HMLGEDLGPL SIKELQQLEK QLEYALSQAR 180 QRKTQIMMEQ MDELRRKERQ LGELNKQLKN QLEAEGCSRY KAVETSCAPN ATVGIDGRAH 240 SVPNALPGAA TDCEPTLQIG YHQFAAPEPA AMPRNGTDGG ENNFVLGWVL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3mu6_A	3e-20	2	69	1	68	Myocyte-specific enhancer factor 2A
3mu6_B	3e-20	2	69	1	68	Myocyte-specific enhancer factor 2A
3mu6_C	3e-20	2	69	1	68	Myocyte-specific enhancer factor 2A
3mu6_D	3e-20	2	69	1	68	Myocyte-specific enhancer factor 2A
5f28_A	4e-20	1	69	1	69	MEF2C
5f28_B	4e-20	1	69	1	69	MEF2C
5f28_C	4e-20	1	69	1	69	MEF2C
5f28_D	4e-20	1	69	1	69	MEF2C
6byy_A	4e-20	1	81	1	81	MEF2 CHIMERA
6byy_B	4e-20	1	81	1	81	MEF2 CHIMERA
6byy_C	4e-20	1	81	1	81	MEF2 CHIMERA
6byy_D	4e-20	1	81	1	81	MEF2 CHIMERA
6bz1_A	4e-20	1	81	1	81	MEF2 CHIMERA
6bz1_B	4e-20	1	81	1	81	MEF2 CHIMERA
6bz1_C	4e-20	1	81	1	81	MEF2 CHIMERA
6bz1_D	4e-20	1	81	1	81	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269\|PubMed:19820190}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00315	DAP	Transfer from AT2G45650	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_01474A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY541067	9e-71	AY541067.1 Hordeum vulgare subsp. vulgare AGAMOUS LIKE6-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824169.1	1e-141	MADS-box transcription factor 17-like
Swissprot	Q7XUN2	1e-112	MAD17_ORYSJ; MADS-box transcription factor 17
TrEMBL	A0A2S3I9M9	1e-139	A0A2S3I9M9_9POAL; Uncharacterized protein
STRING	Si010898m	1e-137	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4187	35	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	7e-84	AGAMOUS-like 6

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_01474A

Publications ? help Back to Top
Duan Y, et al. Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.). Plant Mol. Biol., 2012. 80(4-5): p. 429-42 [PMID:22933119] Hu Y, et al. Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development. Mol Plant, 2015. 8(9): p. 1366-84 [PMID:25917758] Bai X, et al. Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice. Sci Rep, 2016. 6: p. 19022 [PMID:26744119]