PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01071A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 359aa    MW: 39172.1 Da    PI: 8.4868
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01071AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.11.7e-09287310226
                                -S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                ktelC+ +   G C+y +rC+FaHg
  Oropetium_20150105_01071A 287 KTELCNKWEH-GACPYAGRCRFAHG 310
                                9********9.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-6285311IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.666285312IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-13285317IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-7286316IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-6287310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-10318349IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.77E-7319348IPR000571Zinc finger, CCCH-type
SMARTSM003560.4322349IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.605322350IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MERELEILSP SQPSIVSSKG DGRSFPSPTQ ASLLETLVDS PASCISLGCG GGSGSAFSPL  60
TGESLLETRL KSPSSCISDN RGCGEGFGFN SLTRTSSPET RPNSPSSCVS DSRVGSSSIR  120
VSKEREREVK EAERLLHAIT ERYNDCFLRL RDATAELVDL RHERIRLRAE NLQLSLLLTE  180
LEAERSKMAS AITPTPPPKP VQAEAAFGGA PRSISIRSKG YLLQQQQPRG EPKSTPQRLR  240
VRASLAVEVS PANPNVQSRN FTSHEAGEKE TEGGQVEFEA YGQGALKTEL CNKWEHGACP  300
YAGRCRFAHG VQELRPVIRH PRYKTLPCQM FISPSGCPYG HRCHFRHSPA PTAKSYYC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A2e-152863501075Tristetraproline
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01071A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679282.11e-114putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN81e-105C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLA0A0E0CZD21e-113A0A0E0CZD2_9ORYZ; Uncharacterized protein
STRINGSi039512m1e-113(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-36C3H family protein