PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_01019A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

Trihelix

Protein Properties

Length: 266aa MW: 28804.5 Da PI: 10.4358

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_01019A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27	1.2e-08	20	94	2	71
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkr 71 W++ e+ aL++a ++ r+r g l+ ++W++ s+++ +++ r+ qCk++ + l+kr ++++++ k+ Oropetium_20150105_01019A 20 WSDGETSALLDAWGPRHLRVRGGPLRPADWRACSAAVtarraAAGRAPRTVDQCKNRVDYLKKRLRAETKRGKGA 94 ***********************************9999888889*****************999987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-13	19	95	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MPSTRRRPPP PPPAWTPEPW SDGETSALLD AWGPRHLRVR GGPLRPADWR ACSAAVTARR 60 AAAGRAPRTV DQCKNRVDYL KKRLRAETKR GKGAPPPTPA VSGCLHRLRA LLRLAPSAPP 120 VFSKRRGTFA APKVKAEKEE EDDDDEEEEE SGGGSSLLRD WPPVPKRRRT AVSLYPVTAS 180 SAAHPDGGGR NGAQVAAALD RLAGTYERVE AAKQREAARL EERRLEAMRD LEIERMRVLV 240 DVAVTSSVRV DSTVGAAAGA AGEYY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_01019A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137072	1e-41	AC137072.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045E22, from chromosome 3, complete sequence.
GenBank	AC213130	1e-41	AC213130.1 Oryza glaberrima clone OG_BBa0027N13, complete sequence.
GenBank	AP014959	1e-41	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	1e-41	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698074.1	1e-105	trihelix transcription factor ASIL1-like
TrEMBL	A0A368SS55	1e-104	A0A368SS55_SETIT; Uncharacterized protein
STRING	GRMZM2G452695_P01	2e-99	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14022	13	13

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_01019A