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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_00339A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | CAMTA | ||||||||
Protein Properties | Length: 693aa MW: 77282.3 Da PI: 7.6406 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 106.3 | 2e-33 | 20 | 93 | 3 | 75 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKv 75 ke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK Oropetium_20150105_00339A 20 KEaQNRWLRPAEICEILKNYRNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKG 93 5559********************************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 50.661 | 15 | 145 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.9E-33 | 18 | 140 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.2E-28 | 21 | 95 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 2.7E-9 | 313 | 399 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 6.5E-10 | 313 | 391 | IPR002909 | IPT domain |
CDD | cd00102 | 8.62E-5 | 313 | 400 | No hit | No description |
SuperFamily | SSF81296 | 4.98E-19 | 314 | 398 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 1.71E-10 | 426 | 482 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.7E-9 | 429 | 481 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.46E-8 | 433 | 482 | No hit | No description |
PROSITE profile | PS50088 | 8.79 | 435 | 467 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 12.992 | 435 | 477 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50096 | 7.62 | 568 | 592 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 693 aa Download sequence Send to blast |
MAEERRYAIA PQLDIQQILK EAQNRWLRPA EICEILKNYR NFRIAPEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKGGKSSSRI RHDDTLQAAR TDSPLSHLPS 120 QTTEGESSLS GQASEYEETE SGNQHGLLAT TANTSVYSHG EENRSVFHNE SGQIAFNEAD 180 SQLNLSSLNG MMKPYSEIHQ MSQPQLSGGL GGSFATEDCS QQNERSLEEA INYPLLKTSS 240 SLSDILKDSF KKSDSFTRWM SRELGEVNDS QITSSSGVNW NSEDADKIIE ATSRDQLDQF 300 TVGPVLAQDQ LFSISDFSPS WTYAGSKTRV IITGRFLNPN EVKRCKWSCM FGEVEVPAQI 360 VADGTLRCYS PPHKPGKVPF YMTCSNRLAC SEVREFEFQP INSQYMDAPS PHGATNKTYL 420 QIRIDGKGPS VLDEEGQGVL HLAAALGYDW AIRPAITAGV NINFRDAHGW TALHWAAFCG 480 RYVSTVAFET MGRNTSEISG LPSIGAVSES RLSSLAGEGL QSGSMGDSLG AVRNAAQAAA 540 RIYQVFRVQS FQRKQTVQYG NDSGEISDEH ALSLLSAHVR GHQVRKHYRK IVWSVGIVEK 600 VILRWRRRGA GLRGFRSTES AMESTSYSGA DFIQNKPAED DYDFLQEGRK QTEERLQKAL 660 ARVKSMAQYP DARDQYQRIL SAVTKLQESQ VL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_00339A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614396.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X1 | ||||
Swissprot | Q6NPP4 | 9e-78 | CMTA2_ARATH; Calmodulin-binding transcription activator 2 | ||||
TrEMBL | A0A0D3HD12 | 0.0 | A0A0D3HD12_9ORYZ; Uncharacterized protein | ||||
TrEMBL | B8BGI5 | 0.0 | B8BGI5_ORYSI; Uncharacterized protein | ||||
STRING | ORGLA10G0066800.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 2e-66 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_00339A |
Publications ? help Back to Top | |||
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