 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_00326A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 329aa MW: 35994.2 Da PI: 4.5819 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_00326A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57.8 | 1.8e-18 | 70 | 121 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ +q+++Le+ Fe +++++ +++ ++A+ lgL+ rqV vWFqNrRa++k
Oropetium_20150105_00326A 70 RRLALDQVRALERNFETDNKLDPDRKVRIARDLGLQPRQVAVWFQNRRARWK 121
467789*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 127.2 | 7.3e-41 | 67 | 159 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84
ekkrrl+ +qv++LE++Fe+++kL+p+rKv++ar+LglqprqvavWFqnrRAR+ktkqlE+d++aL++++dal+++ ++L++++
Oropetium_20150105_00326A 67 EKKRRLALDQVRALERNFETDNKLDPDRKVRIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRARHDALRADCDALRRDK 150
69********************************************************************************** PP
HD-ZIP_I/II 85 eeLreelke 93
++L++e++e
Oropetium_20150105_00326A 151 DALAAEIRE 159
****99986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 329 aa
Download sequence Send
to blast |
MKKQSKRPTS THESTEPGDN KLAFPEEKDL TAQDMEHDHE ETEMDDDDED ELPGGRAAQS 60
SSCGLGEKKR RLALDQVRAL ERNFETDNKL DPDRKVRIAR DLGLQPRQVA VWFQNRRARW 120
KTKQLERDFA ALRARHDALR ADCDALRRDK DALAAEIREL KQKLSKPETA VKLEAASNND 180
AAAEDRQATV VRTSAPAFYK DGSSDSDSSV VFNNDVEASP YSSAVFEPQA PAGFVGGFGG 240
SFMVDSAAAV AMGCSSSLPS FEAKWQQHGS TYPSCDSYRA GSYGGFTEEW LAGSDVISND 300
DGTAGFFSDD HASSLNFSWC ANGADGWD*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 115 | 123 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK060119 | 1e-104 | AK060119.1 Oryza sativa Japonica Group cDNA clone:006-308-F01, full insert sequence. |
| GenBank | AK101522 | 1e-104 | AK101522.1 Oryza sativa Japonica Group cDNA clone:J033046N04, full insert sequence. |
| GenBank | AK101601 | 1e-104 | AK101601.1 Oryza sativa Japonica Group cDNA clone:J033051J21, full insert sequence. |
| GenBank | AK105644 | 1e-104 | AK105644.1 Oryza sativa Japonica Group cDNA clone:001-200-F05, full insert sequence. |
| GenBank | AY554032 | 1e-104 | AY554032.1 Oryza sativa (japonica cultivar-group) clone R10191 Hox13 (hox13) mRNA, partial cds. |
| GenBank | CT831039 | 1e-104 | CT831039.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA023E12, full insert sequence. |
