PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00325A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 330aa    MW: 35654.9 Da    PI: 6.2427
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00325AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.7e-14113164155
                                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++ + + a+i+  A++Y+++L+
  Oropetium_20150105_00325A 113 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAHRGDQASIVGGAINYVRELE 164
                                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.04E-14111168No hitNo description
Gene3DG3DSA:4.10.280.103.9E-14111168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-17112177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.904112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-11113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-11118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MALEAVVFSQ QAGHFGYGRV DSPYAPMPWC DVPGAGDWDH DELLLASIAP PDVDDCWETF  60
SAAKQFDQQQ QSSETSTEGG NKGAASDEPV AAAGRRKRRR AKVVKNREEM ETQRMTHIAV  120
ERNRRRQMNE YLAVLRSLMP PSYAHRGDQA SIVGGAINYV RELEQLLQSL QVQRSIRKST  180
DAAGHRPSPF AGFFTFPQYS TSSPHAGCGA ASSSSSSSDA AAEPAGGQPA PPAVADIEVT  240
MAEGHASLKV LAPRRPKQLL RLVAGLQQLR IPPLHLNVTS SVDAMVLYTF SLKVEDDSKM  300
GSVEDIATAV HEILSSVQQQ QQQGETAVM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19599RKRRR
2113124RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00325A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9613973e-89EU961397.1 Zea mays clone 235094 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985409.11e-128transcription factor bHLH94
SwissprotQ9C7T45e-70BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0A9F3U91e-133A0A0A9F3U9_ARUDO; Uncharacterized protein
STRINGPavir.J40759.1.p1e-130(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]