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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Oropetium_20150105_00282A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
NAC |
| Protein Properties |
Length: 315aa MW: 34527.8 Da PI: 7.1943 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_00282A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 162.7 | 1.4e-50 | 11 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyW 83
lppGfrF+Ptd+e++v+yL kk++g+ +++++++++vdiyk++PwdLp k++ ++ ew+fFs+rd+ky++g r+nr++ sgyW
Oropetium_20150105_00282A 11 LPPGFRFQPTDQEIIVDYLDKKIAGTATSVTSIVADVDIYKFDPWDLPdKAIVFGDGEWFFFSPRDRKYPNGGRPNRTAGSGYW 94
79****************************999***************777777999*************************** PP
NAM 84 katgkdkevlskkgel..vglkktLvfykgrapkgektdWvmheyrl 128
katg+dk++l+++g+ g+kk Lvfy+gr+pkg+kt+Wvmheyrl
Oropetium_20150105_00282A 95 KATGTDKPILAAGGAPhcLGVKKALVFYQGRSPKGTKTEWVMHEYRL 141
***********85554559**************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MAAFRLGIPQ LPPGFRFQPT DQEIIVDYLD KKIAGTATSV TSIVADVDIY KFDPWDLPDK 60
AIVFGDGEWF FFSPRDRKYP NGGRPNRTAG SGYWKATGTD KPILAAGGAP HCLGVKKALV 120
FYQGRSPKGT KTEWVMHEYR LLLDQHHHIV SRRPNSNRDS MRLDDWVLCR VRKKGVCYVD 180
YATSSDQPTM SPVHISRDVQ VPTVNASSAG GFLGDVVVEG WNYSFELASA DIGGGGAAAS 240
TGTGHQYYQG SQTGQLVSSM LESIKRKLSF QAIDELYLLQ PTSKRANTVR TAAAGDDEQM 300
SPTSFSISET DEVF*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-65 | 11 | 174 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-65 | 11 | 174 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-65 | 11 | 174 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-65 | 11 | 174 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 4e-65 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 4e-65 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 4e-65 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 4e-65 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 4e-65 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 4e-65 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 4e-65 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 4e-65 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 3e-65 | 11 | 174 | 17 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 3e-65 | 11 | 174 | 17 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}. |
