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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_00226A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bHLH | ||||||||
Protein Properties | Length: 80aa MW: 9210.45 Da PI: 11.1129 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.9 | 4.7e-05 | 13 | 40 | 15 | 44 |
HHHHHHHHHHCTSCCC...TTS-STCHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiL 44 +iN+ +++L++llP++s + + + + +L Oropetium_20150105_00226A 13 EINELISKLQSLLPESS--RRRNANRVRTL 40 7**************72..54448888887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MSGRRGGRIS DEEINELISK LQSLLPESSR RRNANRVRTL FWVLACFDLP NVYDHYACVR 60 TAPDSISSVL QQNRRRRSF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_00226A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_00226A |