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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Oropetium_20150105_00107A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
E2F/DP |
| Protein Properties |
Length: 357aa MW: 38026.4 Da PI: 8.8908 |
| Description |
E2F/DP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_00107A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | E2F_TDP | 85.6 | 3.9e-27 | 132 | 218 | 3 | 71 |
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkek 64
+++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k
Oropetium_20150105_00107A 132 NRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpnnsidspdpdnanaqqyDEKNIRRRVYDALNVLMAMDIISK-DK 211
689*******...*****999************************************************************.** PP
E2F_TDP 65 neirwkg 71
+ei+wkg
Oropetium_20150105_00107A 212 KEIQWKG 218
*****98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0042023 | Biological Process | DNA endoreduplication |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0005737 | Cellular Component | cytoplasm |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MVSGVVNVPA EDGGAPAVQR ALPPVRVRAS SGTPTPSGTA HSASTSGGSA GSPSSRSEQQ 60
APDGAAKGAA MSAAGPSASA SASASASTPV SESTFLRLNT LDINGDDAPS SQVPTSKKKK 120
RGSRAVGPDK GNRGLRQFSM KVCEKVESKG RTTYNEVADE LVAEFSDPNN SIDSPDPDNA 180
NAQQYDEKNI RRRVYDALNV LMAMDIISKD KKEIQWKGLP RTSISDVEEL KTELVGLKGR 240
IEKKSAYLQE LQDQYVGLQN LIRRNEQLYG SGDTPSGGVA LPFILVQTRP HATVEVEISE 300
DMQLVHFDFN RGEGTSVPNI YRHQLQHPGR PNNGTVRLPS SPPIPGILKG RVKHEH*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
