PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_00086A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | C2H2 | ||||||||
Protein Properties | Length: 599aa MW: 64591.5 Da PI: 6.052 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.4e-05 | 487 | 512 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C +C ++F++k +L +H ++ + Oropetium_20150105_00086A 487 FECDidYCRMTFRTKTELSVHKKNiC 512 89*******************99866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 23 | 487 | 509 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.492 | 510 | 539 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.6 | 510 | 534 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 512 | 534 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.58E-12 | 521 | 576 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.8E-9 | 527 | 560 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.219 | 540 | 569 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0038 | 540 | 564 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 542 | 564 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.8E-8 | 561 | 592 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 39 | 570 | 592 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 599 aa Download sequence Send to blast |
MRIRRYAARL LSSSTTNPAS PPAQPAAAWL HASDDDCCAF CDVVHASPQE SPDAVKRKGH 60 IASRVPESDV KTGELVGLAQ GLPASEAKRC KIDRGLPFNE ADAAGMGVAN GGSVVNEADV 120 KLEDARGATL LTKADTNNAS NAGPFVTNDA TIDQELKCGG SLATDAAKPN VTGENSFVNG 180 STSELEVLKV APHPNEVAFD PEVTERVSLE SIAAALQGVT GMEPNVTGGP SVMNESDEEP 240 GVLRAISLVN EACTEPELME GISLTSKTVT VAEVTNTVPE VTRTGSLSSD GAVGPEVTRE 300 ACLVQTTPVP EVTGRASCCA DDDPSSNEAQ HPSFDTIGNV QVEKAGDTVD TAMQSSCFDA 360 ADGDASVSST SNSPVEAKDL TVEGVAHFTP SVSCILDVVA RSIGRSSRTD VICYARRKGK 420 KKLDLLEVKT ENIELDDGVI CNQIEEGPCE RVASRAGSAD VKLADIKREL MDNSATRRVK 480 KMKTDKFECD IDYCRMTFRT KTELSVHKKN ICTVKSCSRH FRSHKYLRRH QSVHNDYMPY 540 RCPWEGCNMA FKWSWDRAEH FQVHAGKKPY KCTTPGCSKI YKFVSDFIRH RRRCKPQR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6a57_A | 3e-37 | 487 | 593 | 23 | 129 | Lysine-specific demethylase REF6 |
6a58_A | 3e-37 | 487 | 593 | 23 | 129 | Lysine-specific demethylase REF6 |
6a59_A | 3e-37 | 487 | 593 | 23 | 129 | Lysine-specific demethylase REF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_00086A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC105734 | 3e-94 | AC105734.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0050N02, complete sequence. | |||
GenBank | AK068803 | 3e-94 | AK068803.1 Oryza sativa Japonica Group cDNA clone:J013161F12, full insert sequence. | |||
GenBank | AP014959 | 3e-94 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 3e-94 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792345.1 | 0.0 | uncharacterized protein LOC112873563 | ||||
TrEMBL | A0A2S3IU92 | 0.0 | A0A2S3IU92_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J38242.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11491 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 2e-35 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_00086A |