PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI12G03660.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 495aa MW: 53530 Da PI: 7.5403

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI12G03660.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.7	8e-11	191	217	7	33
HHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLee 33 rr+++NReAAr+sR+RKka+i++Le ORUFI12G03660.1 191 MRRLAQNREAARKSRLRKKAYIQQLES 217 69***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.8E-7	183	231	No hit	No description
SMART	SM00338	1.8E-5	184	260	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.128	187	231	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.0E-6	189	225	No hit	No description
Pfam	PF00170	1.4E-7	190	218	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	192	207	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.1E-29	269	343	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence Send to blast
MPQTGRMGEA RRGQNPHHVL GYGFHGTTLP NSMASANLFE QGGGGGGGAA YFGELEEALV 60 HQVATLRRRA QQTATTTTSH HGHTTPFSTA AAAATATATA RPPATLDIFP SWPMRRSSLP 120 TPKDGCSNVT ADTTDSESSS KNNGDQGAAA ADMASQFDQI PQQQQKQHKK MAASSTHSDH 180 RMTKTLDPKI MRRLAQNREA ARKSRLRKKA YIQQLESSKL RLAQMEQDLE RARSQGLLLG 240 GSPGGNTSAG AAMFDAEYGR WLEDGGRRMA ELHGGLHAHL PDGDLRAIVD DALAHYDELF 300 RLRAAAAKAD VFHLITGTWA TPAERCFLWM GGFQPSDLLK TVAPQLDPLT EQQVVGICSL 360 QQSSQQAEEA LSQGLEQLHQ SLAETVANGG SVVNEASLGS FMGYMALALG KLSNLEGFVI 420 QADNLRQQTL HQMHRILTIR QAARCFLAIG EYHNRLRALS SLWASRPREI LVADEGNCGE 480 LSIAAQPSES QFSAF

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence Send to blast

MPQTGRMGEA RRGQNPHHVL GYGFHGTTLP NSMASANLFE QGGGGGGGAA YFGELEEALV  60
HQVATLRRRA QQTATTTTSH HGHTTPFSTA AAAATATATA RPPATLDIFP SWPMRRSSLP  120
TPKDGCSNVT ADTTDSESSS KNNGDQGAAA ADMASQFDQI PQQQQKQHKK MAASSTHSDH  180
RMTKTLDPKI MRRLAQNREA ARKSRLRKKA YIQQLESSKL RLAQMEQDLE RARSQGLLLG  240
GSPGGNTSAG AAMFDAEYGR WLEDGGRRMA ELHGGLHAHL PDGDLRAIVD DALAHYDELF  300
RLRAAAAKAD VFHLITGTWA TPAERCFLWM GGFQPSDLLK TVAPQLDPLT EQQVVGICSL  360
QQSSQQAEEA LSQGLEQLHQ SLAETVANGG SVVNEASLGS FMGYMALALG KLSNLEGFVI  420
QADNLRQQTL HQMHRILTIR QAARCFLAIG EYHNRLRALS SLWASRPREI LVADEGNCGE  480
LSIAAQPSES QFSAF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101620	0.0	AK101620.1 Oryza sativa Japonica Group cDNA clone:J033052J02, full insert sequence.
GenBank	FJ750929	0.0	FJ750929.1 Oryza sativa clone KCS115G01 DNA-binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619722.1	0.0	transcription factor TGAL11
Swissprot	Q2QXL0	0.0	TGL11_ORYSJ; Transcription factor TGAL11
TrEMBL	A0A0E0RDX1	0.0	A0A0E0RDX1_ORYRU; Uncharacterized protein
STRING	ORUFI12G03660.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-128	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]