PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G02510.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 828aa    MW: 91492.3 Da    PI: 5.5771
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G02510.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.39.2e-10679724550
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                      k+ r+   NReA r++Rq+Kka +++Lee+vk L   N++L k+l+
  ORUFI12G02510.2 679 KKSRKPLGNREAVRKYRQKKKAHTAHLEEEVKRLRVINQQLVKRLQ 724
                      8999999***********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF549287.47E-36153318IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010217.472156232IPR000504RNA recognition motif domain
SMARTSM003607.7E-23157228IPR000504RNA recognition motif domain
PfamPF000764.3E-17158226IPR000504RNA recognition motif domain
CDDcd005909.40E-21158228No hitNo description
Gene3DG3DSA:3.30.70.3307.0E-38159313IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010211.691234315IPR000504RNA recognition motif domain
SMARTSM003606.1E-12235311IPR000504RNA recognition motif domain
CDDcd005901.14E-11236302No hitNo description
PfamPF000761.5E-10236300IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3301.5E-22314405IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.33E-21321407IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010215.528327404IPR000504RNA recognition motif domain
SMARTSM003605.4E-18328400IPR000504RNA recognition motif domain
PfamPF000766.5E-16329397IPR000504RNA recognition motif domain
Gene3DG3DSA:1.20.5.1701.3E-12674743No hitNo description
SMARTSM003386.6E-9675742IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.795677724IPR004827Basic-leucine zipper domain
PfamPF077166.1E-11678731IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.6E-7679724No hitNo description
CDDcd146865.55E-11680733No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
MQISIPIVFL SFQLETRARR WLIPPNLLGT RPHLPKLPWN FELFKMPRRT DNAASANSVE  60
PEKSEECLEF DDDEEEEVEE EEIEYEEIEE EIEEEEVEED EDVVEEVEEV DEEEDEEEEE  120
ESDETEGVSK TKGVHQKDVT EKGKHAELLA LPPHGSEVYV GGISSDVSSE DLKRLCEPVG  180
EVVEVRMMRG KDDSRGYAFV NFRTKGLALK AVKELNNAKL KGKRIRVSSS QAKNKLFIGN  240
VPHSWTDDDF RKVVEEVGPG VLKADLMKVS SANRNRGYGF VEYYNHACAE YARQEMSSPT  300
FKLDSNAPTV SWADPKNNDS ASTSQVKSVY VKNLPKNVTQ AQLKRLFEHH GEIEKVVLPP  360
SRGGHDNRYG FVHFKDRSMA MRALQNTERY ELDGQVLDCS LAKPPAADKK DDRVPLPSSN  420
GAPLLPSYPP LGYGIMSVPG AYGDAPASTA QPMLYAPRAP PGAAMVPMML PDGRLVYVVQ  480
QPGGQLPLAS PPPQQAGHRS GSGGRHGGSG GRYGGGGGSS GSSRPEECVS ETRLYMRILP  540
VSQSAESDGA LYRQFTPVSH MDYEISGPES EVDSEVWLGW VAQRRRRRAT APYSGRRRVH  600
EASDAGDDTA IRRSWQQVKE IPTSLDDFLP SIRTTCTHTH TCNPPGPSAT EHTHTCYHTH  660
TRVFSSDDDS CGGDKAKPKK SRKPLGNREA VRKYRQKKKA HTAHLEEEVK RLRVINQQLV  720
KRLQGQAALE VEVVRLRSLL VDVRSRINGA LGSCPIQAQC GVDNVLGCDG MAQCFAGKPE  780
LGVRQSCAPS TVNCHISSDS GQNLVVPHAL SPSDVIGSFM VSSTSKDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6r5k_D3e-1413649422479Polyadenylate-binding protein, cytoplasmic and nuclear
6r5k_F3e-1413649422479Polyadenylate-binding protein, cytoplasmic and nuclear
6r5k_H3e-1413649422479Polyadenylate-binding protein, cytoplasmic and nuclear
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1509517GGRYGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA on GAGA-like motif and 5'-(C/G)ACGTG(G/T)C(A/G)-3' consensus motif in the promoters of target genes (PubMed:27495811). Component of ribonucleosomes, which are complexes of at least 20 other different heterogenious nuclear ribonucleoproteins (hnRNP). hnRNP play an important role in processing of precursor mRNA in the nucleus (By similarity). Required during flower development and for cell fate determination (PubMed:21304947). Acts both as an antagonist and as a promoter of polycomb LHP1 gene regulation activity, depending of target genes, to regulate the transcription of stress-responsive and flowering genes (PubMed:21304947, PubMed:27495811). May regulate histone H3 trimethylation on lysine 27 (H3K27me3) (PubMed:21304947). Recognizes and binds histone H3 tails methylated at 'Lys-4' (H3K4me) and acetylated at 'Lys-9' (H3K9ac), leading to epigenetic activation. When in complex with LHP1, recognizes and binds histone H3 tails methylated at 'Lys-4' (H3K4me) and 'Lys-27' (H3K27me), mostly corresponding to stress-responsive genes (PubMed:27495811). May function as a suppressor of cell-autonomous immune responses involving glucosinolates, salicylic acid (SA) and jasmonic acid (JA) pathways toward pathogenic bacteria and fungi (PubMed:24914891). {ECO:0000250|UniProtKB:O60506, ECO:0000269|PubMed:21304947, ECO:0000269|PubMed:24914891, ECO:0000269|PubMed:27495811}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slighty induced upon pathogen infection (e.g. P.syringae) (PubMed:24914891). Rapidly recruited to chromatin upon methyl jasmonate treatment (MeJA) to mediate transcriptional gene activation (PubMed:27495811). {ECO:0000269|PubMed:24914891, ECO:0000269|PubMed:27495811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0687000.0AK068700.1 Oryza sativa Japonica Group cDNA clone:J013160I09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619730.10.0heterogeneous nuclear ribonucleoprotein Q isoform X1
SwissprotQ9ASP61e-123HNRPQ_ARATH; Heterogeneous nuclear ribonucleoprotein Q
TrEMBLA0A0E0RDH00.0A0A0E0RDH0_ORYRU; Uncharacterized protein
STRINGORUFI12G02510.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35040.18e-19bZIP family protein
Publications ? help Back to Top
  1. Peal L,Jambunathan N,Mahalingam R
    Phylogenetic and expression analysis of RNA-binding proteins with triple RNA recognition motifs in plants.
    Mol. Cells, 2011. 31(1): p. 55-64
    [PMID:21120628]
  2. Le Roux C, et al.
    The hnRNP-Q protein LIF2 participates in the plant immune response.
    PLoS ONE, 2014. 9(6): p. e99343
    [PMID:24914891]
  3. Molitor AM, et al.
    The Arabidopsis hnRNP-Q Protein LIF2 and the PRC1 Subunit LHP1 Function in Concert to Regulate the Transcription of Stress-Responsive Genes.
    Plant Cell, 2016. 28(9): p. 2197-2211
    [PMID:27495811]