PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G01570.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 404aa    MW: 44781 Da    PI: 6.834
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G01570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.35.2e-52111391128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      lppGfrFhPtdeel+v+yL +++++ k+++  +i+ev+iyk++PwdLp k++ +e++ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++l
  ORUFI12G01570.1  11 LPPGFRFHPTDEELIVHYLMNQAASVKCPV-PIIAEVNIYKCNPWDLPgKALFGEKNEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL 103
                      79****************************.88***************666667788************************************* PP

              NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      s+ ++ ++g+kk Lvfykg+ pkg+ktdW+mheyrl
  ORUFI12G01570.1 104 STpTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRL 139
                      9988899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-637173IPR003441NAC domain
PROSITE profilePS5100559.15311173IPR003441NAC domain
PfamPF023653.2E-2612139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MPSSGGAMPA LPPGFRFHPT DEELIVHYLM NQAASVKCPV PIIAEVNIYK CNPWDLPGKA  60
LFGEKNEWYF FSPRDRKYPN GARPNRAAGS GYWKATGTDK SILSTPTSDN IGVKKALVFY  120
KGKPPKGVKT DWIMHEYRLT GTSANNTTTT KQRRASSMTM RLDDWVLCRI HKKSNDFNSS  180
DQHDQEPEGS TVDEQLEDIH DNNSSSQQPP APPDMNNQQS DFQPMTAMSM SKSCSLTDLL  240
NNLDCAALSQ FLLDGSSDAI AELPAPPSPL IYPNQTLNYN INNNMPHAFE SRLDHHDGYV  300
NNYNVNGLRR KRMMACSATS FDDGSSSSSD FLHVAKKPLL LPSDSRGSGF GGGYCNQQLS  360
ETATGFQFQN GNMLSHPFPL NQQLLLNNHL QMHLASIQAR EQAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-711117915174Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0004950.0BX000495.1 Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620532.10.0NAC transcription factor 29
TrEMBLA0A0E0RD430.0A0A0E0RD43_ORYRU; Uncharacterized protein
STRINGORUFI12G01570.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.14e-80NAC domain containing protein 47