PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI11G12850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 507aa MW: 52220.3 Da PI: 7.966 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11 | 0.00078 | 327 | 381 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC.............TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkas..........kapskKlsKaeiLekAveYIksLq 55 RR++i +++ L++l+P + + Ka +L + ++Y++sLq ORUFI11G12850.1 327 VRREKISERMKLLQDLVPGCNkvakfsqkinLNFTLVTGKAVMLDEIINYVQSLQ 381 6******************777877766664333333568888888888888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.347 | 316 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-4 | 326 | 386 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-9 | 326 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.4E-10 | 326 | 397 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.00E-7 | 328 | 385 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MAHDGFLGGG GGSFHAMAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVGGGVHKA 60 ALMDELASRL GGVCGGGLGG GGVPSPPSSS RYASCYSTPV GSPCKPAPAL PVPSLLAAAD 120 AMIAERAARM SCLAAAGHGG GKLSRAASSQ SLLAETAAAG GVHQLPASDG SSSDAPCRKR 180 KAPCAKARGK DAATTIAKVL PLLSAPPLQS RRRTSPETMV NFPQSPEPGT KAKKCKLSAD 240 AAGDEDTKPV AGDAGHGGNG KGKVLDAAGE PPKDYIHVRA RRGQATDSHS LAERVKAAGI 300 DAANHNFFFS SILAFADAIA AVFHLQVRRE KISERMKLLQ DLVPGCNKVA KFSQKINLNF 360 TLVTGKAVML DEIINYVQSL QRQVEFLSMK LSTVNPQLDF DVDNFIPKDA SDPIMPAPLS 420 LPPPPPPLSY SPEGASPGIC YASSQGTAMQ SVVTSTKHLE TAPTFANHHV IPVPSLDGFH 480 SAHSQAGSCM WEDDLQSVVQ MGFRGNT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146523 | 0.0 | AC146523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0045D11 map near 50283S, complete sequence. | |||
GenBank | AK288970 | 0.0 | AK288970.1 Oryza sativa Japonica Group cDNA, clone: J090085B10, full insert sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615633.1 | 0.0 | transcription factor BHLH089-like isoform X2 | ||||
TrEMBL | A0A0E0R7X2 | 0.0 | A0A0E0R7X2_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI11G12850.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13313 | 25 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 7e-44 | bHLH family protein |