![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORUFI11G09500.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 910aa MW: 100823 Da PI: 6.3088 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.6 | 2.8e-29 | 556 | 606 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ ORUFI11G09500.4 556 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 606 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.348 | 545 | 626 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.1E-26 | 559 | 606 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 6.87E-24 | 803 | 898 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.8E-24 | 809 | 891 | No hit | No description |
SMART | SM00666 | 1.4E-25 | 812 | 894 | IPR000270 | PB1 domain |
Pfam | PF00564 | 5.8E-19 | 812 | 893 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 26.274 | 812 | 894 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 910 aa Download sequence Send to blast |
MLRRCSHPFL RYLQSVIKAV RIEEMDGGGT PDGDPVPDMD MLMLSSALDG LDSYTDLVAG 60 SSVVDSIFSA LTCFPPSQER LLHVSTAVGS SSRQDDADVS ITEEGTTRTR SDRAAGLASG 120 EPVAVGIGSV PKPFDGVTLT ERMLRALAML KEASGGEAIL VQVWMPVRNG EQHVLTTSDQ 180 PFLLDQKLTG YREVSRQFTF SAEEGPGLFP GLPGRVFMSG MPEWTSNVMY YHGSEYLRVD 240 YARRHEVRGS LAMPVFNSSG GSCCAVLEVV MTREKDNFCL EMVNVSNALQ SYSRDQKLAL 300 MEIFDVLQAV CQAHLLPLAL AWIPVCSKRD VLVSIEYGAK FGKRNKEVLC IEESACYVND 360 TRVRDFVQVC AEHPLEKGQG VAGNAYLSNN PFFSSDVKDY DMHAYPLVNH ARKFGLHAAV 420 AIRLRSTYTK NDDYVLEFFL PVLCKGGEEQ QLLLDSISTT MRKVCKSLRT VSDAELKEDV 480 TRKPSNENRS GTRCPSPVNL IYSGREIDVS NETKTNTPLE YQIEGIDEQL SDTKSTNKLI 540 KCSNASDGEK RRSSTEKSVS LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS 600 RKIKKVNRSL KKIQNVISSV HGVEGVLKYD PSTGCLISSV SPSIEPVLMN VEHKGSDPLP 660 IESELPHLNF EPDCDAYRRE HAGQDVLHKL QNKQNGEINF DMDDGELFRN SHSTRTLSGA 720 FCEDMSNGLY VAREMTCVAK TGTRTERLEH KPSSRDSFSA PQEYRMESET DKSNKNSKQS 780 LPSSSSMTDC STSSGETFKS IKSQSANESN TTVVVKASYK NDTIRFKLLP SMKYEQLLEE 840 IAKRLKLSVG VFQLKYKDDE GDWVILASDA DLQECLEILD TTRLHILKLQ VQDVVCPIGS 900 SSGSCSMLRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK064859 | 0.0 | AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616880.1 | 0.0 | protein NLP2-like isoform X1 | ||||
Refseq | XP_015616881.1 | 0.0 | protein NLP2-like isoform X1 | ||||
TrEMBL | A0A0E0R6P4 | 0.0 | A0A0E0R6P4_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI11G09500.2 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43500.2 | 0.0 | Nin-like family protein |