PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G02370.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 547aa    MW: 59971.6 Da    PI: 5.1798
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G02370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS286.86e-881735391373
             GRAS   1 lvelLlecAe.avssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                      l+elL++cA+ av+sg+ + a +lL++++ ++sp+gd+++Rla+yf+ +L+arla+   +l + l +s++++ +  e l a+++f  ++ +  +
  ORUFI11G02370.1 173 LRELLMSCAQaAVASGNRRSAGELLEQIKRHSSPTGDATERLAHYFADGLEARLAG-AASLEHRLLASAEERASAMELLEAYQVFMAACCFKWV 265
                      689******835899****************************************9.88999999999999999******************** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                      ++  aN aIl+a+eg +r+Hi+D++ + +GlQWp+Llq La+R++gpp++R+T vg+p++g   +++le+tg+rL++ A+++g+p++  v    
  ORUFI11G02370.1 266 AFTFANMAILRAAEGRSRLHIVDYGGQyHGLQWPSLLQRLAEREGGPPEVRMTLVGHPQPGfrPARRLERTGRRLSNCARAFGLPVQDVV---- 355
                      ************************86538********************************************************99554.... PP

             GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                                + + + a++Vn vl+l +l+des+  ++  +rd+vL  +++++P v+v +  +  h+++ F +rf eal ++salfd+l a+ p
  ORUFI11G02370.1 356 --------GVDPDDEAAVVVNDVLSLGTLMDESGVFDDpsPRDTVLGSIRDMRPAVFVQAVVNGAHGAPFFPTRFREALFFFSALFDMLGATTP 441
                      ........233445779****************98877779************************************************77777 PP

             GRAS 277 res.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                      +e  + r+++Er +l+r++v v+a egaer+er et+++W++r ++aG+++++++ ++++ +++ +r+ + +++ +ee+ g+l++gWk+r L++
  ORUFI11G02370.1 442 EEGsHLRVVLERDVLRRAAVGVIAGEGAERVERPETYRRWQARNRRAGLRQAAVEGDVVEAVRRRVRRRHHEEFVIEEDAGWLLQGWKGRILYA 535
                      765499****************************************************************999********************* PP

             GRAS 370 vSaW 373
                       SaW
  ORUFI11G02370.1 536 HSAW 539
                      **** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.204147520IPR005202Transcription factor GRAS
PfamPF035142.1E-85173539IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MGPAAPPSEA AAAADDVVLP YISRILMEED IDDDMFFCLY PDHPALLEAQ QPFAQILSSS  60
SGIAGEVNSA PMEDSAALMM QGSGNGRGRK GSKHGGDELE AEVGRASKLM ATPEEEDDDD  120
DGVGEMLEKM MLNGDEDEAF HGETNAPRVP AEKKCGKAAR RRRRQAKGEV VDLRELLMSC  180
AQAAVASGNR RSAGELLEQI KRHSSPTGDA TERLAHYFAD GLEARLAGAA SLEHRLLASA  240
EERASAMELL EAYQVFMAAC CFKWVAFTFA NMAILRAAEG RSRLHIVDYG GQYHGLQWPS  300
LLQRLAEREG GPPEVRMTLV GHPQPGFRPA RRLERTGRRL SNCARAFGLP VQDVVGVDPD  360
DEAAVVVNDV LSLGTLMDES GVFDDPSPRD TVLGSIRDMR PAVFVQAVVN GAHGAPFFPT  420
RFREALFFFS ALFDMLGATT PEEGSHLRVV LERDVLRRAA VGVIAGEGAE RVERPETYRR  480
WQARNRRAGL RQAAVEGDVV EAVRRRVRRR HHEEFVIEED AGWLLQGWKG RILYAHSAWV  540
VAEDGAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-3318054025378Protein SCARECROW
5b3h_D1e-3318054025378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235270.0AC123527.3 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence.
GenBankAK0730510.0AK073051.1 Oryza sativa Japonica Group cDNA clone:J033000F22, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619736.10.0scarecrow-like protein 30
TrEMBLA0A0E0R3Y40.0A0A0E0R3Y4_ORYRU; Uncharacterized protein
STRINGORUFI11G02370.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160181014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.12e-81SCARECROW-like 14